Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02285 and AO356_02290 are separated by 171 nucleotides AO356_02290 and AO356_02295 are separated by 241 nucleotides AO356_02295 and AO356_02300 are separated by 10 nucleotides
AO356_02285: AO356_02285 - beta-hexosaminidase, at 494,844 to 495,854
_02285
AO356_02290: AO356_02290 - TetR family transcriptional regulator, at 496,026 to 496,733
_02290
AO356_02295: AO356_02295 - LexA family transcriptional regulator, at 496,975 to 497,583
_02295
AO356_02300: AO356_02300 - CDP-glycerol--UDP-pyrophosphoryl-N- acetylglucosaminyl-N-acetylmannosamine glycerophosphotransferase, at 497,594 to 498,067
_02300
Position (kb)
496
497 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 495.208 kb on + strand, within AO356_02285 at 495.209 kb on - strand, within AO356_02285 at 495.209 kb on - strand, within AO356_02285 at 495.479 kb on - strand, within AO356_02285 at 495.568 kb on + strand, within AO356_02285 at 495.568 kb on + strand, within AO356_02285 at 495.569 kb on - strand, within AO356_02285 at 495.669 kb on + strand, within AO356_02285 at 495.670 kb on - strand, within AO356_02285 at 495.762 kb on + strand at 495.854 kb on + strand at 495.855 kb on - strand at 495.855 kb on - strand at 495.865 kb on + strand at 495.865 kb on + strand at 495.866 kb on - strand at 495.868 kb on + strand at 495.869 kb on - strand at 495.944 kb on + strand at 495.945 kb on - strand at 495.945 kb on - strand at 495.988 kb on - strand at 495.993 kb on - strand at 496.314 kb on - strand, within AO356_02290 at 496.314 kb on - strand, within AO356_02290 at 496.314 kb on - strand, within AO356_02290 at 496.316 kb on - strand, within AO356_02290 at 496.316 kb on - strand, within AO356_02290 at 496.337 kb on - strand, within AO356_02290 at 496.485 kb on - strand, within AO356_02290 at 496.485 kb on - strand, within AO356_02290 at 496.769 kb on - strand at 496.769 kb on - strand at 496.827 kb on + strand at 496.827 kb on + strand at 496.827 kb on + strand at 496.828 kb on - strand at 496.831 kb on + strand at 496.831 kb on + strand at 496.831 kb on + strand at 496.832 kb on - strand at 496.832 kb on - strand at 496.933 kb on + strand at 496.935 kb on + strand at 496.937 kb on + strand at 496.954 kb on + strand at 496.979 kb on + strand at 497.581 kb on + strand at 497.593 kb on + strand at 497.593 kb on + strand at 497.593 kb on + strand at 497.593 kb on + strand at 497.593 kb on + strand at 497.593 kb on + strand at 497.593 kb on + strand at 497.593 kb on + strand at 497.594 kb on - strand at 497.594 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 495,208 + AO356_02285 0.36 -0.8 495,209 - AO356_02285 0.36 -0.0 495,209 - AO356_02285 0.36 -0.1 495,479 - AO356_02285 0.63 -0.5 495,568 + AO356_02285 0.72 -0.4 495,568 + AO356_02285 0.72 -1.4 495,569 - AO356_02285 0.72 +0.2 495,669 + AO356_02285 0.82 +0.1 495,670 - AO356_02285 0.82 +0.4 495,762 + +0.1 495,854 + -0.2 495,855 - +0.4 495,855 - -1.1 495,865 + -0.2 495,865 + +0.9 495,866 - +1.3 495,868 + +0.2 495,869 - +0.5 495,944 + +0.3 495,945 - +0.5 495,945 - +0.5 495,988 - +0.1 495,993 - +0.4 496,314 - AO356_02290 0.41 +0.4 496,314 - AO356_02290 0.41 -1.3 496,314 - AO356_02290 0.41 -0.9 496,316 - AO356_02290 0.41 -0.1 496,316 - AO356_02290 0.41 -2.8 496,337 - AO356_02290 0.44 +0.2 496,485 - AO356_02290 0.65 -1.5 496,485 - AO356_02290 0.65 -1.0 496,769 - +0.3 496,769 - +0.7 496,827 + -0.3 496,827 + +0.0 496,827 + +0.1 496,828 - -0.0 496,831 + -0.4 496,831 + +0.9 496,831 + -0.4 496,832 - +0.4 496,832 - -0.2 496,933 + +0.5 496,935 + +1.1 496,937 + +0.1 496,954 + +0.0 496,979 + -1.1 497,581 + +1.3 497,593 + +0.6 497,593 + -0.1 497,593 + -1.7 497,593 + -0.3 497,593 + -0.1 497,593 + -0.1 497,593 + -0.3 497,593 + -0.1 497,594 - -1.7 497,594 - +0.4
Or see this region's nucleotide sequence