Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02290

Experiment: LB 37C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_02285 and AO356_02290 are separated by 171 nucleotidesAO356_02290 and AO356_02295 are separated by 241 nucleotidesAO356_02295 and AO356_02300 are separated by 10 nucleotides AO356_02285: AO356_02285 - beta-hexosaminidase, at 494,844 to 495,854 _02285 AO356_02290: AO356_02290 - TetR family transcriptional regulator, at 496,026 to 496,733 _02290 AO356_02295: AO356_02295 - LexA family transcriptional regulator, at 496,975 to 497,583 _02295 AO356_02300: AO356_02300 - CDP-glycerol--UDP-pyrophosphoryl-N- acetylglucosaminyl-N-acetylmannosamine glycerophosphotransferase, at 497,594 to 498,067 _02300 Position (kb) 496 497Strain fitness (log2 ratio) -3 -2 -1 0 1at 495.208 kb on + strand, within AO356_02285at 495.209 kb on - strand, within AO356_02285at 495.209 kb on - strand, within AO356_02285at 495.479 kb on - strand, within AO356_02285at 495.568 kb on + strand, within AO356_02285at 495.568 kb on + strand, within AO356_02285at 495.569 kb on - strand, within AO356_02285at 495.669 kb on + strand, within AO356_02285at 495.670 kb on - strand, within AO356_02285at 495.762 kb on + strandat 495.854 kb on + strandat 495.855 kb on - strandat 495.855 kb on - strandat 495.865 kb on + strandat 495.865 kb on + strandat 495.866 kb on - strandat 495.868 kb on + strandat 495.869 kb on - strandat 495.944 kb on + strandat 495.945 kb on - strandat 495.945 kb on - strandat 495.988 kb on - strandat 495.993 kb on - strandat 496.314 kb on - strand, within AO356_02290at 496.314 kb on - strand, within AO356_02290at 496.314 kb on - strand, within AO356_02290at 496.316 kb on - strand, within AO356_02290at 496.316 kb on - strand, within AO356_02290at 496.337 kb on - strand, within AO356_02290at 496.485 kb on - strand, within AO356_02290at 496.485 kb on - strand, within AO356_02290at 496.769 kb on - strandat 496.769 kb on - strandat 496.827 kb on + strandat 496.827 kb on + strandat 496.827 kb on + strandat 496.828 kb on - strandat 496.831 kb on + strandat 496.831 kb on + strandat 496.831 kb on + strandat 496.832 kb on - strandat 496.832 kb on - strandat 496.933 kb on + strandat 496.935 kb on + strandat 496.937 kb on + strandat 496.954 kb on + strandat 496.979 kb on + strandat 497.581 kb on + strandat 497.593 kb on + strandat 497.593 kb on + strandat 497.593 kb on + strandat 497.593 kb on + strandat 497.593 kb on + strandat 497.593 kb on + strandat 497.593 kb on + strandat 497.593 kb on + strandat 497.594 kb on - strandat 497.594 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB 37C
remove
495,208 + AO356_02285 0.36 -0.8
495,209 - AO356_02285 0.36 -0.0
495,209 - AO356_02285 0.36 -0.1
495,479 - AO356_02285 0.63 -0.5
495,568 + AO356_02285 0.72 -0.4
495,568 + AO356_02285 0.72 -1.4
495,569 - AO356_02285 0.72 +0.2
495,669 + AO356_02285 0.82 +0.1
495,670 - AO356_02285 0.82 +0.4
495,762 + +0.1
495,854 + -0.2
495,855 - +0.4
495,855 - -1.1
495,865 + -0.2
495,865 + +0.9
495,866 - +1.3
495,868 + +0.2
495,869 - +0.5
495,944 + +0.3
495,945 - +0.5
495,945 - +0.5
495,988 - +0.1
495,993 - +0.4
496,314 - AO356_02290 0.41 +0.4
496,314 - AO356_02290 0.41 -1.3
496,314 - AO356_02290 0.41 -0.9
496,316 - AO356_02290 0.41 -0.1
496,316 - AO356_02290 0.41 -2.8
496,337 - AO356_02290 0.44 +0.2
496,485 - AO356_02290 0.65 -1.5
496,485 - AO356_02290 0.65 -1.0
496,769 - +0.3
496,769 - +0.7
496,827 + -0.3
496,827 + +0.0
496,827 + +0.1
496,828 - -0.0
496,831 + -0.4
496,831 + +0.9
496,831 + -0.4
496,832 - +0.4
496,832 - -0.2
496,933 + +0.5
496,935 + +1.1
496,937 + +0.1
496,954 + +0.0
496,979 + -1.1
497,581 + +1.3
497,593 + +0.6
497,593 + -0.1
497,593 + -1.7
497,593 + -0.3
497,593 + -0.1
497,593 + -0.1
497,593 + -0.3
497,593 + -0.1
497,594 - -1.7
497,594 - +0.4

Or see this region's nucleotide sequence