Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3441

Experiment: acetate; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3439 and Rru_A3440 are separated by 25 nucleotidesRru_A3440 and Rru_A3441 are separated by 14 nucleotidesRru_A3441 and Rru_A3442 are separated by 369 nucleotides Rru_A3439: Rru_A3439 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (NCBI), at 3,961,453 to 3,962,490 _A3439 Rru_A3440: Rru_A3440 - hypothetical protein (NCBI), at 3,962,516 to 3,962,698 _A3440 Rru_A3441: Rru_A3441 - Transcriptional Regulator, PadR-like family (NCBI), at 3,962,713 to 3,963,327 _A3441 Rru_A3442: Rru_A3442 - Transposase IS116/IS110/IS902 (NCBI), at 3,963,697 to 3,964,728 _A3442 Position (kb) 3962 3963 3964Strain fitness (log2 ratio) -2 -1 0 1at 3963.000 kb on - strand, within Rru_A3441at 3963.033 kb on - strand, within Rru_A3441at 3963.055 kb on - strand, within Rru_A3441at 3963.057 kb on - strand, within Rru_A3441at 3963.099 kb on - strand, within Rru_A3441at 3963.327 kb on + strandat 3963.327 kb on + strandat 3963.328 kb on - strandat 3963.328 kb on - strandat 3963.370 kb on + strandat 3963.438 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 18 uM
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3,963,000 - Rru_A3441 0.47 -1.1
3,963,033 - Rru_A3441 0.52 -1.1
3,963,055 - Rru_A3441 0.56 -2.6
3,963,057 - Rru_A3441 0.56 -1.5
3,963,099 - Rru_A3441 0.63 -1.7
3,963,327 + -0.7
3,963,327 + -1.0
3,963,328 - -1.8
3,963,328 - -0.7
3,963,370 + +0.0
3,963,438 - +0.0

Or see this region's nucleotide sequence