Experiment: acetate; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3439 and Rru_A3440 are separated by 25 nucleotides Rru_A3440 and Rru_A3441 are separated by 14 nucleotides Rru_A3441 and Rru_A3442 are separated by 369 nucleotides
Rru_A3439: Rru_A3439 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (NCBI), at 3,961,453 to 3,962,490
_A3439
Rru_A3440: Rru_A3440 - hypothetical protein (NCBI), at 3,962,516 to 3,962,698
_A3440
Rru_A3441: Rru_A3441 - Transcriptional Regulator, PadR-like family (NCBI), at 3,962,713 to 3,963,327
_A3441
Rru_A3442: Rru_A3442 - Transposase IS116/IS110/IS902 (NCBI), at 3,963,697 to 3,964,728
_A3442
Position (kb)
3962
3963
3964 Strain fitness (log2 ratio)
-2
-1
0
1 at 3963.000 kb on - strand, within Rru_A3441 at 3963.033 kb on - strand, within Rru_A3441 at 3963.055 kb on - strand, within Rru_A3441 at 3963.057 kb on - strand, within Rru_A3441 at 3963.099 kb on - strand, within Rru_A3441 at 3963.327 kb on + strand at 3963.327 kb on + strand at 3963.328 kb on - strand at 3963.328 kb on - strand at 3963.370 kb on + strand at 3963.438 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 18 uM remove 3,963,000 - Rru_A3441 0.47 -1.1 3,963,033 - Rru_A3441 0.52 -1.1 3,963,055 - Rru_A3441 0.56 -2.6 3,963,057 - Rru_A3441 0.56 -1.5 3,963,099 - Rru_A3441 0.63 -1.7 3,963,327 + -0.7 3,963,327 + -1.0 3,963,328 - -1.8 3,963,328 - -0.7 3,963,370 + +0.0 3,963,438 - +0.0
Or see this region's nucleotide sequence