Strain Fitness in Rhodospirillum rubrum S1H around Rru_AR0042

Experiment: acetate; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2351 and Rru_AR0041 are separated by 449 nucleotidesRru_AR0041 and Rru_AR0042 are separated by 95 nucleotidesRru_AR0042 and Rru_AR0043 are separated by 119 nucleotides Rru_A2351: Rru_A2351 - Macrocin-O-methyltransferase (NCBI), at 2,729,598 to 2,731,271 _A2351 Rru_AR0041: Rru_AR0041 - tRNA-Met (NCBI), at 2,731,721 to 2,731,797 _AR0041 Rru_AR0042: Rru_AR0042 - 5S ribosomal RNA (NCBI), at 2,731,893 to 2,732,007 _AR0042 Rru_AR0043: Rru_AR0043 - 23S ribosomal RNA (NCBI), at 2,732,127 to 2,734,884 _AR0043 Position (kb) 2731 2732 2733Strain fitness (log2 ratio) -2 -1 0 1at 2730.945 kb on - strand, within Rru_A2351at 2731.047 kb on + strand, within Rru_A2351at 2731.047 kb on + strand, within Rru_A2351at 2731.047 kb on + strand, within Rru_A2351at 2731.513 kb on + strandat 2731.514 kb on - strandat 2731.544 kb on - strandat 2731.551 kb on + strandat 2731.551 kb on + strandat 2731.552 kb on - strandat 2731.799 kb on + strandat 2731.908 kb on - strand, within Rru_AR0042at 2731.908 kb on - strand, within Rru_AR0042at 2731.908 kb on - strand, within Rru_AR0042at 2731.908 kb on - strand, within Rru_AR0042

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 18 uM
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2,730,945 - Rru_A2351 0.80 -0.9
2,731,047 + Rru_A2351 0.87 +0.0
2,731,047 + Rru_A2351 0.87 +0.0
2,731,047 + Rru_A2351 0.87 -1.1
2,731,513 + -1.6
2,731,514 - +0.0
2,731,544 - -1.3
2,731,551 + -0.6
2,731,551 + -1.1
2,731,552 - -1.4
2,731,799 + -1.7
2,731,908 - Rru_AR0042 0.13 -1.0
2,731,908 - Rru_AR0042 0.13 -1.8
2,731,908 - Rru_AR0042 0.13 -1.7
2,731,908 - Rru_AR0042 0.13 -1.7

Or see this region's nucleotide sequence