Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2218

Experiment: acetate; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2217 and Rru_A2218 are separated by 159 nucleotidesRru_A2218 and Rru_A2219 are separated by 169 nucleotidesRru_A2219 and Rru_A2220 are separated by 368 nucleotides Rru_A2217: Rru_A2217 - hypothetical protein (NCBI), at 2,575,844 to 2,576,596 _A2217 Rru_A2218: Rru_A2218 - Short-chain dehydrogenase/reductase SDR (NCBI), at 2,576,756 to 2,577,562 _A2218 Rru_A2219: Rru_A2219 - Dihydroneopterin aldolase family (NCBI), at 2,577,732 to 2,578,151 _A2219 Rru_A2220: Rru_A2220 - Excinuclease ABC, C subunit (NCBI), at 2,578,520 to 2,580,439 _A2220 Position (kb) 2576 2577 2578Strain fitness (log2 ratio) -3 -2 -1 0 1at 2575.812 kb on + strandat 2575.813 kb on - strandat 2575.813 kb on - strandat 2575.813 kb on - strandat 2575.813 kb on - strandat 2575.813 kb on - strandat 2576.491 kb on - strand, within Rru_A2217at 2576.717 kb on + strandat 2576.717 kb on + strandat 2576.717 kb on + strandat 2576.717 kb on + strandat 2576.717 kb on + strandat 2576.717 kb on + strandat 2577.560 kb on + strandat 2577.560 kb on + strandat 2577.635 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 18 uM
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2,575,812 + -1.4
2,575,813 - -1.0
2,575,813 - +0.0
2,575,813 - -1.3
2,575,813 - -3.1
2,575,813 - -0.8
2,576,491 - Rru_A2217 0.86 +0.0
2,576,717 + -0.5
2,576,717 + -1.6
2,576,717 + -1.3
2,576,717 + -0.3
2,576,717 + +0.0
2,576,717 + -1.5
2,577,560 + +0.0
2,577,560 + -1.0
2,577,635 + -1.6

Or see this region's nucleotide sequence