Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1704

Experiment: acetate; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1702 and Rru_A1703 overlap by 1 nucleotidesRru_A1703 and Rru_A1704 are separated by 22 nucleotidesRru_A1704 and Rru_A1705 are separated by 177 nucleotides Rru_A1702: Rru_A1702 - DNA-directed DNA polymerase (NCBI), at 1,992,525 to 1,993,649 _A1702 Rru_A1703: Rru_A1703 - Thymidylate kinase (NCBI), at 1,993,649 to 1,994,293 _A1703 Rru_A1704: Rru_A1704 - Serine-type D-Ala-D-Ala carboxypeptidase (NCBI), at 1,994,316 to 1,995,482 _A1704 Rru_A1705: Rru_A1705 - Rare lipoprotein A (NCBI), at 1,995,660 to 1,996,763 _A1705 Position (kb) 1994 1995 1996Strain fitness (log2 ratio) -2 -1 0 1at 1995.544 kb on - strandat 1995.877 kb on + strand, within Rru_A1705at 1995.877 kb on + strand, within Rru_A1705at 1995.878 kb on - strand, within Rru_A1705at 1995.878 kb on - strand, within Rru_A1705at 1995.878 kb on - strand, within Rru_A1705at 1996.115 kb on - strand, within Rru_A1705at 1996.201 kb on + strand, within Rru_A1705at 1996.201 kb on + strand, within Rru_A1705at 1996.202 kb on - strand, within Rru_A1705at 1996.202 kb on - strand, within Rru_A1705at 1996.202 kb on - strand, within Rru_A1705at 1996.436 kb on + strand, within Rru_A1705at 1996.437 kb on - strand, within Rru_A1705

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 18 uM
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1,995,544 - -2.4
1,995,877 + Rru_A1705 0.20 -1.1
1,995,877 + Rru_A1705 0.20 -1.8
1,995,878 - Rru_A1705 0.20 -0.8
1,995,878 - Rru_A1705 0.20 -1.0
1,995,878 - Rru_A1705 0.20 -0.0
1,996,115 - Rru_A1705 0.41 -0.0
1,996,201 + Rru_A1705 0.49 -1.1
1,996,201 + Rru_A1705 0.49 -0.3
1,996,202 - Rru_A1705 0.49 -1.2
1,996,202 - Rru_A1705 0.49 -1.5
1,996,202 - Rru_A1705 0.49 -0.0
1,996,436 + Rru_A1705 0.70 -0.0
1,996,437 - Rru_A1705 0.70 -0.0

Or see this region's nucleotide sequence