Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1017

Experiment: acetate; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1015 and Rru_A1016 overlap by 1 nucleotidesRru_A1016 and Rru_A1017 overlap by 4 nucleotidesRru_A1017 and Rru_A1018 are separated by 98 nucleotides Rru_A1015: Rru_A1015 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 1,203,553 to 1,204,389 _A1015 Rru_A1016: Rru_A1016 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 1,204,389 to 1,205,381 _A1016 Rru_A1017: Rru_A1017 - Spermidine/putrescine ABC transporter ATP-binding subunit (NCBI), at 1,205,378 to 1,206,544 _A1017 Rru_A1018: Rru_A1018 - extracellular solute-binding protein, family 1 (NCBI), at 1,206,643 to 1,207,752 _A1018 Position (kb) 1205 1206 1207Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1204.390 kb on + strandat 1204.391 kb on - strandat 1204.391 kb on - strandat 1204.553 kb on + strand, within Rru_A1016at 1204.741 kb on + strand, within Rru_A1016at 1204.742 kb on - strand, within Rru_A1016at 1204.742 kb on - strand, within Rru_A1016at 1204.768 kb on + strand, within Rru_A1016at 1204.769 kb on - strand, within Rru_A1016at 1204.769 kb on - strand, within Rru_A1016at 1204.769 kb on - strand, within Rru_A1016at 1204.769 kb on - strand, within Rru_A1016at 1204.774 kb on + strand, within Rru_A1016at 1204.775 kb on - strand, within Rru_A1016at 1204.775 kb on - strand, within Rru_A1016at 1204.856 kb on + strand, within Rru_A1016at 1204.856 kb on + strand, within Rru_A1016at 1204.856 kb on + strand, within Rru_A1016at 1204.857 kb on - strand, within Rru_A1016at 1204.857 kb on - strand, within Rru_A1016at 1204.897 kb on + strand, within Rru_A1016at 1204.898 kb on - strand, within Rru_A1016at 1204.987 kb on + strand, within Rru_A1016at 1204.987 kb on + strand, within Rru_A1016at 1204.987 kb on + strand, within Rru_A1016at 1205.068 kb on + strand, within Rru_A1016at 1205.069 kb on - strand, within Rru_A1016at 1205.069 kb on - strand, within Rru_A1016at 1205.069 kb on - strand, within Rru_A1016at 1205.069 kb on - strand, within Rru_A1016at 1205.069 kb on - strand, within Rru_A1016at 1205.069 kb on - strand, within Rru_A1016at 1205.089 kb on + strand, within Rru_A1016at 1205.089 kb on + strand, within Rru_A1016at 1205.089 kb on + strand, within Rru_A1016at 1205.089 kb on + strand, within Rru_A1016at 1205.090 kb on - strand, within Rru_A1016at 1205.090 kb on - strand, within Rru_A1016at 1205.090 kb on - strand, within Rru_A1016at 1205.096 kb on - strand, within Rru_A1016at 1205.096 kb on - strand, within Rru_A1016at 1205.125 kb on + strand, within Rru_A1016at 1205.245 kb on + strand, within Rru_A1016at 1205.245 kb on + strand, within Rru_A1016at 1205.245 kb on + strand, within Rru_A1016at 1205.246 kb on - strand, within Rru_A1016at 1205.246 kb on - strand, within Rru_A1016at 1205.246 kb on - strand, within Rru_A1016at 1205.421 kb on + strandat 1205.421 kb on + strandat 1205.421 kb on + strandat 1205.501 kb on - strand, within Rru_A1017at 1205.516 kb on - strand, within Rru_A1017at 1205.516 kb on - strand, within Rru_A1017at 1205.518 kb on - strand, within Rru_A1017at 1205.518 kb on - strand, within Rru_A1017at 1205.518 kb on - strand, within Rru_A1017at 1205.518 kb on - strand, within Rru_A1017at 1205.518 kb on - strand, within Rru_A1017at 1205.518 kb on - strand, within Rru_A1017at 1205.518 kb on - strand, within Rru_A1017at 1205.538 kb on + strand, within Rru_A1017at 1205.572 kb on + strand, within Rru_A1017at 1205.572 kb on + strand, within Rru_A1017at 1205.572 kb on + strand, within Rru_A1017at 1205.573 kb on - strand, within Rru_A1017at 1205.673 kb on + strand, within Rru_A1017at 1205.674 kb on - strand, within Rru_A1017at 1205.674 kb on - strand, within Rru_A1017at 1205.674 kb on - strand, within Rru_A1017at 1205.794 kb on - strand, within Rru_A1017at 1205.794 kb on - strand, within Rru_A1017at 1205.799 kb on + strand, within Rru_A1017at 1205.799 kb on + strand, within Rru_A1017at 1205.799 kb on + strand, within Rru_A1017at 1205.799 kb on + strand, within Rru_A1017at 1205.799 kb on + strand, within Rru_A1017at 1205.799 kb on + strand, within Rru_A1017at 1205.799 kb on + strand, within Rru_A1017at 1205.799 kb on + strand, within Rru_A1017at 1205.799 kb on + strand, within Rru_A1017at 1205.800 kb on - strand, within Rru_A1017at 1205.800 kb on - strand, within Rru_A1017at 1205.800 kb on - strand, within Rru_A1017at 1205.800 kb on - strand, within Rru_A1017at 1205.800 kb on - strand, within Rru_A1017at 1205.800 kb on - strand, within Rru_A1017at 1205.800 kb on - strand, within Rru_A1017at 1205.800 kb on - strand, within Rru_A1017at 1205.968 kb on + strand, within Rru_A1017at 1206.196 kb on + strand, within Rru_A1017at 1206.196 kb on + strand, within Rru_A1017at 1206.196 kb on + strand, within Rru_A1017at 1206.196 kb on + strand, within Rru_A1017at 1206.196 kb on + strand, within Rru_A1017at 1206.196 kb on + strand, within Rru_A1017at 1206.197 kb on - strand, within Rru_A1017at 1206.197 kb on - strand, within Rru_A1017at 1206.197 kb on - strand, within Rru_A1017at 1206.197 kb on - strand, within Rru_A1017at 1206.197 kb on - strand, within Rru_A1017at 1206.213 kb on + strand, within Rru_A1017at 1206.213 kb on + strand, within Rru_A1017at 1206.213 kb on + strand, within Rru_A1017at 1206.213 kb on + strand, within Rru_A1017at 1206.214 kb on - strand, within Rru_A1017at 1206.214 kb on - strand, within Rru_A1017at 1206.214 kb on - strand, within Rru_A1017at 1206.214 kb on - strand, within Rru_A1017at 1206.561 kb on - strandat 1206.644 kb on + strandat 1206.644 kb on + strandat 1206.644 kb on + strandat 1206.644 kb on + strandat 1206.644 kb on + strandat 1206.645 kb on - strandat 1206.645 kb on - strandat 1206.645 kb on - strandat 1206.645 kb on - strandat 1206.645 kb on - strandat 1206.749 kb on + strandat 1206.750 kb on - strandat 1206.750 kb on - strandat 1206.824 kb on + strand, within Rru_A1018at 1206.824 kb on + strand, within Rru_A1018at 1206.824 kb on + strand, within Rru_A1018at 1206.824 kb on + strand, within Rru_A1018at 1206.824 kb on + strand, within Rru_A1018at 1206.824 kb on + strand, within Rru_A1018at 1206.825 kb on - strand, within Rru_A1018at 1206.876 kb on + strand, within Rru_A1018at 1206.876 kb on + strand, within Rru_A1018at 1206.876 kb on + strand, within Rru_A1018at 1206.959 kb on + strand, within Rru_A1018at 1206.959 kb on + strand, within Rru_A1018at 1207.020 kb on + strand, within Rru_A1018at 1207.021 kb on - strand, within Rru_A1018at 1207.103 kb on + strand, within Rru_A1018at 1207.103 kb on + strand, within Rru_A1018at 1207.104 kb on - strand, within Rru_A1018at 1207.104 kb on - strand, within Rru_A1018at 1207.104 kb on - strand, within Rru_A1018at 1207.181 kb on + strand, within Rru_A1018at 1207.181 kb on + strand, within Rru_A1018at 1207.182 kb on - strand, within Rru_A1018at 1207.182 kb on - strand, within Rru_A1018at 1207.182 kb on - strand, within Rru_A1018at 1207.182 kb on - strand, within Rru_A1018at 1207.361 kb on + strand, within Rru_A1018at 1207.362 kb on - strand, within Rru_A1018at 1207.391 kb on + strand, within Rru_A1018

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 18 uM
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1,204,390 + +0.1
1,204,391 - -1.8
1,204,391 - -2.8
1,204,553 + Rru_A1016 0.17 +0.1
1,204,741 + Rru_A1016 0.35 +0.1
1,204,742 - Rru_A1016 0.36 -0.9
1,204,742 - Rru_A1016 0.36 +0.1
1,204,768 + Rru_A1016 0.38 -1.5
1,204,769 - Rru_A1016 0.38 -0.9
1,204,769 - Rru_A1016 0.38 -0.9
1,204,769 - Rru_A1016 0.38 +0.1
1,204,769 - Rru_A1016 0.38 -2.9
1,204,774 + Rru_A1016 0.39 +0.1
1,204,775 - Rru_A1016 0.39 +0.1
1,204,775 - Rru_A1016 0.39 -2.5
1,204,856 + Rru_A1016 0.47 +0.1
1,204,856 + Rru_A1016 0.47 +1.2
1,204,856 + Rru_A1016 0.47 -2.9
1,204,857 - Rru_A1016 0.47 -0.4
1,204,857 - Rru_A1016 0.47 +0.1
1,204,897 + Rru_A1016 0.51 +0.1
1,204,898 - Rru_A1016 0.51 +0.1
1,204,987 + Rru_A1016 0.60 +0.1
1,204,987 + Rru_A1016 0.60 +0.1
1,204,987 + Rru_A1016 0.60 +0.1
1,205,068 + Rru_A1016 0.68 +0.1
1,205,069 - Rru_A1016 0.68 +0.1
1,205,069 - Rru_A1016 0.68 +0.1
1,205,069 - Rru_A1016 0.68 +0.1
1,205,069 - Rru_A1016 0.68 -0.9
1,205,069 - Rru_A1016 0.68 +0.1
1,205,069 - Rru_A1016 0.68 -0.8
1,205,089 + Rru_A1016 0.70 -0.3
1,205,089 + Rru_A1016 0.70 -0.1
1,205,089 + Rru_A1016 0.70 +0.1
1,205,089 + Rru_A1016 0.70 -2.0
1,205,090 - Rru_A1016 0.71 +0.1
1,205,090 - Rru_A1016 0.71 -1.4
1,205,090 - Rru_A1016 0.71 -0.6
1,205,096 - Rru_A1016 0.71 +0.1
1,205,096 - Rru_A1016 0.71 +0.1
1,205,125 + Rru_A1016 0.74 +0.1
1,205,245 + Rru_A1016 0.86 +0.1
1,205,245 + Rru_A1016 0.86 +0.1
1,205,245 + Rru_A1016 0.86 -2.3
1,205,246 - Rru_A1016 0.86 -1.9
1,205,246 - Rru_A1016 0.86 -1.5
1,205,246 - Rru_A1016 0.86 +0.1
1,205,421 + -0.8
1,205,421 + -0.6
1,205,421 + -0.8
1,205,501 - Rru_A1017 0.11 +0.1
1,205,516 - Rru_A1017 0.12 -0.9
1,205,516 - Rru_A1017 0.12 +0.1
1,205,518 - Rru_A1017 0.12 -1.1
1,205,518 - Rru_A1017 0.12 +0.1
1,205,518 - Rru_A1017 0.12 -1.9
1,205,518 - Rru_A1017 0.12 -2.3
1,205,518 - Rru_A1017 0.12 -1.3
1,205,518 - Rru_A1017 0.12 +0.1
1,205,518 - Rru_A1017 0.12 +0.1
1,205,538 + Rru_A1017 0.14 -1.0
1,205,572 + Rru_A1017 0.17 +0.1
1,205,572 + Rru_A1017 0.17 +0.1
1,205,572 + Rru_A1017 0.17 +0.1
1,205,573 - Rru_A1017 0.17 +0.1
1,205,673 + Rru_A1017 0.25 +0.1
1,205,674 - Rru_A1017 0.25 -2.4
1,205,674 - Rru_A1017 0.25 +0.1
1,205,674 - Rru_A1017 0.25 +0.1
1,205,794 - Rru_A1017 0.36 -0.9
1,205,794 - Rru_A1017 0.36 -1.5
1,205,799 + Rru_A1017 0.36 +0.1
1,205,799 + Rru_A1017 0.36 +0.1
1,205,799 + Rru_A1017 0.36 -1.8
1,205,799 + Rru_A1017 0.36 -0.4
1,205,799 + Rru_A1017 0.36 -0.9
1,205,799 + Rru_A1017 0.36 +0.1
1,205,799 + Rru_A1017 0.36 +0.1
1,205,799 + Rru_A1017 0.36 -0.9
1,205,799 + Rru_A1017 0.36 +0.1
1,205,800 - Rru_A1017 0.36 -1.5
1,205,800 - Rru_A1017 0.36 +0.1
1,205,800 - Rru_A1017 0.36 -0.9
1,205,800 - Rru_A1017 0.36 +0.1
1,205,800 - Rru_A1017 0.36 -0.9
1,205,800 - Rru_A1017 0.36 +0.1
1,205,800 - Rru_A1017 0.36 -0.9
1,205,800 - Rru_A1017 0.36 -0.9
1,205,968 + Rru_A1017 0.51 -0.9
1,206,196 + Rru_A1017 0.70 -2.7
1,206,196 + Rru_A1017 0.70 -0.8
1,206,196 + Rru_A1017 0.70 -3.3
1,206,196 + Rru_A1017 0.70 -1.5
1,206,196 + Rru_A1017 0.70 -0.9
1,206,196 + Rru_A1017 0.70 +0.1
1,206,197 - Rru_A1017 0.70 -1.4
1,206,197 - Rru_A1017 0.70 +0.1
1,206,197 - Rru_A1017 0.70 -0.1
1,206,197 - Rru_A1017 0.70 +0.1
1,206,197 - Rru_A1017 0.70 -1.3
1,206,213 + Rru_A1017 0.72 -2.0
1,206,213 + Rru_A1017 0.72 +0.1
1,206,213 + Rru_A1017 0.72 +0.1
1,206,213 + Rru_A1017 0.72 +0.1
1,206,214 - Rru_A1017 0.72 +0.1
1,206,214 - Rru_A1017 0.72 -1.2
1,206,214 - Rru_A1017 0.72 +0.1
1,206,214 - Rru_A1017 0.72 +0.1
1,206,561 - +0.1
1,206,644 + -1.2
1,206,644 + -0.7
1,206,644 + +0.1
1,206,644 + -1.9
1,206,644 + -1.6
1,206,645 - +0.1
1,206,645 - -1.9
1,206,645 - +0.1
1,206,645 - +0.1
1,206,645 - -0.3
1,206,749 + -3.1
1,206,750 - -1.8
1,206,750 - -0.6
1,206,824 + Rru_A1018 0.16 -0.5
1,206,824 + Rru_A1018 0.16 -1.6
1,206,824 + Rru_A1018 0.16 +0.1
1,206,824 + Rru_A1018 0.16 +0.1
1,206,824 + Rru_A1018 0.16 -0.9
1,206,824 + Rru_A1018 0.16 -0.8
1,206,825 - Rru_A1018 0.16 -0.8
1,206,876 + Rru_A1018 0.21 +0.1
1,206,876 + Rru_A1018 0.21 -1.4
1,206,876 + Rru_A1018 0.21 +0.1
1,206,959 + Rru_A1018 0.28 +2.1
1,206,959 + Rru_A1018 0.28 +0.1
1,207,020 + Rru_A1018 0.34 +0.1
1,207,021 - Rru_A1018 0.34 +0.6
1,207,103 + Rru_A1018 0.41 +0.1
1,207,103 + Rru_A1018 0.41 +0.1
1,207,104 - Rru_A1018 0.42 -2.3
1,207,104 - Rru_A1018 0.42 -1.4
1,207,104 - Rru_A1018 0.42 +0.1
1,207,181 + Rru_A1018 0.48 -0.9
1,207,181 + Rru_A1018 0.48 -1.6
1,207,182 - Rru_A1018 0.49 -0.4
1,207,182 - Rru_A1018 0.49 -0.5
1,207,182 - Rru_A1018 0.49 +0.1
1,207,182 - Rru_A1018 0.49 +0.1
1,207,361 + Rru_A1018 0.65 -1.1
1,207,362 - Rru_A1018 0.65 +0.5
1,207,391 + Rru_A1018 0.67 -0.9

Or see this region's nucleotide sequence