Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0809

Experiment: acetate; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0809 and Rru_A0810 are separated by 15 nucleotidesRru_A0810 and Rru_A0811 are separated by 283 nucleotides Rru_A0809: Rru_A0809 - hypothetical protein (NCBI), at 964,687 to 966,627 _A0809 Rru_A0810: Rru_A0810 - hypothetical protein (NCBI), at 966,643 to 966,933 _A0810 Rru_A0811: Rru_A0811 - Helix-turn-helix protein, CopG (NCBI), at 967,217 to 967,687 _A0811 Position (kb) 964 965 966 967Strain fitness (log2 ratio) -3 -2 -1 0 1at 963.732 kb on + strandat 963.795 kb on + strandat 963.795 kb on + strandat 963.944 kb on + strandat 964.150 kb on - strandat 964.150 kb on - strandat 964.191 kb on - strandat 964.194 kb on + strandat 964.195 kb on - strandat 964.383 kb on + strandat 964.470 kb on - strandat 964.596 kb on - strandat 964.619 kb on + strandat 964.686 kb on + strandat 964.699 kb on - strandat 964.751 kb on + strandat 964.751 kb on + strandat 964.751 kb on + strandat 964.751 kb on + strandat 964.752 kb on - strandat 964.752 kb on - strandat 964.752 kb on - strandat 964.752 kb on - strandat 964.753 kb on + strandat 964.754 kb on - strandat 964.754 kb on - strandat 964.816 kb on - strandat 964.886 kb on + strand, within Rru_A0809at 964.887 kb on - strand, within Rru_A0809at 964.887 kb on - strand, within Rru_A0809at 964.901 kb on + strand, within Rru_A0809at 964.901 kb on + strand, within Rru_A0809at 965.124 kb on + strand, within Rru_A0809at 965.162 kb on + strand, within Rru_A0809at 965.165 kb on - strand, within Rru_A0809at 965.229 kb on - strand, within Rru_A0809at 965.286 kb on - strand, within Rru_A0809at 965.474 kb on - strand, within Rru_A0809at 965.474 kb on - strand, within Rru_A0809at 965.525 kb on - strand, within Rru_A0809at 965.527 kb on - strand, within Rru_A0809at 965.617 kb on - strand, within Rru_A0809at 965.713 kb on + strand, within Rru_A0809at 965.713 kb on + strand, within Rru_A0809at 965.714 kb on - strand, within Rru_A0809at 965.714 kb on - strand, within Rru_A0809at 965.739 kb on + strand, within Rru_A0809at 965.829 kb on - strand, within Rru_A0809at 965.834 kb on + strand, within Rru_A0809at 966.204 kb on - strand, within Rru_A0809at 966.331 kb on - strand, within Rru_A0809at 966.565 kb on + strandat 966.566 kb on - strandat 966.566 kb on - strandat 966.749 kb on + strand, within Rru_A0810at 966.749 kb on + strand, within Rru_A0810at 966.749 kb on + strand, within Rru_A0810at 966.750 kb on - strand, within Rru_A0810at 966.750 kb on - strand, within Rru_A0810at 966.750 kb on - strand, within Rru_A0810at 966.750 kb on - strand, within Rru_A0810at 966.750 kb on - strand, within Rru_A0810at 966.756 kb on + strand, within Rru_A0810at 966.756 kb on + strand, within Rru_A0810at 966.831 kb on - strand, within Rru_A0810at 966.835 kb on - strand, within Rru_A0810at 966.835 kb on - strand, within Rru_A0810at 966.835 kb on - strand, within Rru_A0810at 966.916 kb on + strandat 967.086 kb on + strandat 967.087 kb on - strandat 967.087 kb on - strandat 967.087 kb on - strandat 967.087 kb on - strandat 967.087 kb on - strandat 967.136 kb on + strandat 967.136 kb on + strandat 967.137 kb on - strandat 967.137 kb on - strandat 967.191 kb on + strandat 967.369 kb on - strand, within Rru_A0811

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 18 uM
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963,732 + +0.1
963,795 + -1.1
963,795 + +0.1
963,944 + -0.9
964,150 - +0.1
964,150 - -2.3
964,191 - +0.1
964,194 + -0.5
964,195 - +0.1
964,383 + -0.9
964,470 - -1.7
964,596 - +0.1
964,619 + -1.7
964,686 + +0.1
964,699 - +0.1
964,751 + +0.1
964,751 + -1.4
964,751 + +0.1
964,751 + +0.1
964,752 - -0.2
964,752 - -0.2
964,752 - -0.5
964,752 - +0.1
964,753 + -1.6
964,754 - -0.9
964,754 - +0.1
964,816 - +0.1
964,886 + Rru_A0809 0.10 -1.7
964,887 - Rru_A0809 0.10 +0.1
964,887 - Rru_A0809 0.10 -1.0
964,901 + Rru_A0809 0.11 -3.2
964,901 + Rru_A0809 0.11 +0.1
965,124 + Rru_A0809 0.23 -0.5
965,162 + Rru_A0809 0.24 -1.4
965,165 - Rru_A0809 0.25 +0.1
965,229 - Rru_A0809 0.28 -0.2
965,286 - Rru_A0809 0.31 -0.8
965,474 - Rru_A0809 0.41 -1.5
965,474 - Rru_A0809 0.41 -2.8
965,525 - Rru_A0809 0.43 -2.2
965,527 - Rru_A0809 0.43 -1.3
965,617 - Rru_A0809 0.48 -2.6
965,713 + Rru_A0809 0.53 +0.1
965,713 + Rru_A0809 0.53 -0.9
965,714 - Rru_A0809 0.53 +0.1
965,714 - Rru_A0809 0.53 +0.1
965,739 + Rru_A0809 0.54 -1.1
965,829 - Rru_A0809 0.59 +0.1
965,834 + Rru_A0809 0.59 -2.5
966,204 - Rru_A0809 0.78 -1.2
966,331 - Rru_A0809 0.85 -1.5
966,565 + +0.1
966,566 - -3.6
966,566 - -1.3
966,749 + Rru_A0810 0.36 -1.6
966,749 + Rru_A0810 0.36 -0.7
966,749 + Rru_A0810 0.36 +0.1
966,750 - Rru_A0810 0.37 -1.1
966,750 - Rru_A0810 0.37 -0.2
966,750 - Rru_A0810 0.37 +0.1
966,750 - Rru_A0810 0.37 -1.6
966,750 - Rru_A0810 0.37 +0.1
966,756 + Rru_A0810 0.39 -0.6
966,756 + Rru_A0810 0.39 +0.1
966,831 - Rru_A0810 0.65 -1.8
966,835 - Rru_A0810 0.66 +0.1
966,835 - Rru_A0810 0.66 -0.9
966,835 - Rru_A0810 0.66 -0.7
966,916 + +0.1
967,086 + -0.5
967,087 - -2.2
967,087 - +0.1
967,087 - +0.1
967,087 - -1.9
967,087 - -0.3
967,136 + +0.1
967,136 + +0.1
967,137 - +0.1
967,137 - -1.4
967,191 + -1.9
967,369 - Rru_A0811 0.32 +0.1

Or see this region's nucleotide sequence