Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0799

Experiment: acetate; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0797 and Rru_A0798 are separated by 4 nucleotidesRru_A0798 and Rru_A0799 are separated by 261 nucleotidesRru_A0799 and Rru_A0800 are separated by 3 nucleotides Rru_A0797: Rru_A0797 - major facilitator transporter superfamily MFS_1 (NCBI), at 951,704 to 952,939 _A0797 Rru_A0798: Rru_A0798 - 7-keto-8-aminopelargonate synthetase and related enzymes-like (NCBI), at 952,944 to 953,501 _A0798 Rru_A0799: Rru_A0799 - extracellular solute-binding protein, family 5 (NCBI), at 953,763 to 955,358 _A0799 Rru_A0800: Rru_A0800 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 955,362 to 956,432 _A0800 Position (kb) 953 954 955 956Strain fitness (log2 ratio) -3 -2 -1 0 1at 953.092 kb on + strand, within Rru_A0798at 953.092 kb on + strand, within Rru_A0798at 953.092 kb on + strand, within Rru_A0798at 953.092 kb on + strand, within Rru_A0798at 953.092 kb on + strand, within Rru_A0798at 953.092 kb on + strand, within Rru_A0798at 953.092 kb on + strand, within Rru_A0798at 953.092 kb on + strand, within Rru_A0798at 953.092 kb on + strand, within Rru_A0798at 953.093 kb on - strand, within Rru_A0798at 953.093 kb on - strand, within Rru_A0798at 953.093 kb on - strand, within Rru_A0798at 953.093 kb on - strand, within Rru_A0798at 953.093 kb on - strand, within Rru_A0798at 953.093 kb on - strand, within Rru_A0798at 953.093 kb on - strand, within Rru_A0798at 953.124 kb on + strand, within Rru_A0798at 953.124 kb on + strand, within Rru_A0798at 953.125 kb on - strand, within Rru_A0798at 953.125 kb on - strand, within Rru_A0798at 953.125 kb on - strand, within Rru_A0798at 953.208 kb on - strand, within Rru_A0798at 953.274 kb on - strand, within Rru_A0798at 953.275 kb on + strand, within Rru_A0798at 953.275 kb on + strand, within Rru_A0798at 953.275 kb on + strand, within Rru_A0798at 953.275 kb on + strand, within Rru_A0798at 953.275 kb on + strand, within Rru_A0798at 953.275 kb on + strand, within Rru_A0798at 953.275 kb on + strand, within Rru_A0798at 953.276 kb on - strand, within Rru_A0798at 953.276 kb on - strand, within Rru_A0798at 953.276 kb on - strand, within Rru_A0798at 953.276 kb on - strand, within Rru_A0798at 953.276 kb on - strand, within Rru_A0798at 953.276 kb on - strand, within Rru_A0798at 953.276 kb on - strand, within Rru_A0798at 953.276 kb on - strand, within Rru_A0798at 953.936 kb on + strand, within Rru_A0799at 953.946 kb on + strand, within Rru_A0799at 954.218 kb on + strand, within Rru_A0799at 954.332 kb on + strand, within Rru_A0799at 954.332 kb on + strand, within Rru_A0799at 954.332 kb on + strand, within Rru_A0799at 954.418 kb on + strand, within Rru_A0799at 954.441 kb on + strand, within Rru_A0799at 954.441 kb on + strand, within Rru_A0799at 954.441 kb on + strand, within Rru_A0799at 954.442 kb on - strand, within Rru_A0799at 954.442 kb on - strand, within Rru_A0799at 954.444 kb on + strand, within Rru_A0799at 954.444 kb on + strand, within Rru_A0799at 954.444 kb on + strand, within Rru_A0799at 954.444 kb on + strand, within Rru_A0799at 954.444 kb on + strand, within Rru_A0799at 954.444 kb on + strand, within Rru_A0799at 954.444 kb on + strand, within Rru_A0799at 954.445 kb on - strand, within Rru_A0799at 954.445 kb on - strand, within Rru_A0799at 954.485 kb on + strand, within Rru_A0799at 954.596 kb on + strand, within Rru_A0799at 954.597 kb on - strand, within Rru_A0799at 954.597 kb on - strand, within Rru_A0799at 954.624 kb on + strand, within Rru_A0799at 954.625 kb on - strand, within Rru_A0799at 954.625 kb on - strand, within Rru_A0799at 954.628 kb on - strand, within Rru_A0799at 954.628 kb on - strand, within Rru_A0799at 954.702 kb on + strand, within Rru_A0799at 954.702 kb on + strand, within Rru_A0799at 954.703 kb on - strand, within Rru_A0799at 954.703 kb on - strand, within Rru_A0799at 954.990 kb on + strand, within Rru_A0799at 954.990 kb on + strand, within Rru_A0799at 954.990 kb on + strand, within Rru_A0799at 954.991 kb on - strand, within Rru_A0799at 955.065 kb on + strand, within Rru_A0799at 955.066 kb on - strand, within Rru_A0799at 955.066 kb on - strand, within Rru_A0799at 955.206 kb on + strandat 955.206 kb on + strandat 955.325 kb on + strandat 955.325 kb on + strandat 955.326 kb on - strandat 955.335 kb on + strandat 955.356 kb on + strandat 955.357 kb on - strandat 955.357 kb on - strandat 955.357 kb on - strandat 955.357 kb on - strandat 955.357 kb on - strandat 955.357 kb on - strandat 955.357 kb on - strandat 955.799 kb on + strand, within Rru_A0800at 955.825 kb on + strand, within Rru_A0800at 955.825 kb on + strand, within Rru_A0800at 955.825 kb on + strand, within Rru_A0800at 955.826 kb on - strand, within Rru_A0800at 955.826 kb on - strand, within Rru_A0800at 955.848 kb on + strand, within Rru_A0800at 955.896 kb on + strand, within Rru_A0800at 955.945 kb on - strand, within Rru_A0800at 956.062 kb on - strand, within Rru_A0800at 956.064 kb on + strand, within Rru_A0800at 956.127 kb on + strand, within Rru_A0800at 956.127 kb on + strand, within Rru_A0800at 956.127 kb on + strand, within Rru_A0800at 956.127 kb on + strand, within Rru_A0800at 956.127 kb on + strand, within Rru_A0800at 956.128 kb on - strand, within Rru_A0800at 956.128 kb on - strand, within Rru_A0800at 956.128 kb on - strand, within Rru_A0800at 956.232 kb on + strand, within Rru_A0800at 956.232 kb on + strand, within Rru_A0800at 956.232 kb on + strand, within Rru_A0800at 956.233 kb on - strand, within Rru_A0800at 956.233 kb on - strand, within Rru_A0800at 956.233 kb on - strand, within Rru_A0800at 956.233 kb on - strand, within Rru_A0800at 956.298 kb on + strand, within Rru_A0800at 956.298 kb on + strand, within Rru_A0800at 956.298 kb on + strand, within Rru_A0800at 956.298 kb on + strand, within Rru_A0800at 956.299 kb on - strand, within Rru_A0800at 956.299 kb on - strand, within Rru_A0800at 956.299 kb on - strand, within Rru_A0800at 956.299 kb on - strand, within Rru_A0800at 956.299 kb on - strand, within Rru_A0800at 956.299 kb on - strand, within Rru_A0800

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 18 uM
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953,092 + Rru_A0798 0.27 +0.7
953,092 + Rru_A0798 0.27 +0.1
953,092 + Rru_A0798 0.27 +0.1
953,092 + Rru_A0798 0.27 +0.1
953,092 + Rru_A0798 0.27 -1.1
953,092 + Rru_A0798 0.27 -1.2
953,092 + Rru_A0798 0.27 -3.1
953,092 + Rru_A0798 0.27 +0.1
953,092 + Rru_A0798 0.27 +0.1
953,093 - Rru_A0798 0.27 -0.3
953,093 - Rru_A0798 0.27 -0.9
953,093 - Rru_A0798 0.27 +0.2
953,093 - Rru_A0798 0.27 +0.1
953,093 - Rru_A0798 0.27 +0.1
953,093 - Rru_A0798 0.27 -1.1
953,093 - Rru_A0798 0.27 -1.1
953,124 + Rru_A0798 0.32 +0.1
953,124 + Rru_A0798 0.32 +0.1
953,125 - Rru_A0798 0.32 -1.5
953,125 - Rru_A0798 0.32 +0.1
953,125 - Rru_A0798 0.32 +0.1
953,208 - Rru_A0798 0.47 -1.6
953,274 - Rru_A0798 0.59 -1.3
953,275 + Rru_A0798 0.59 +0.1
953,275 + Rru_A0798 0.59 +0.1
953,275 + Rru_A0798 0.59 -1.0
953,275 + Rru_A0798 0.59 -1.5
953,275 + Rru_A0798 0.59 -2.0
953,275 + Rru_A0798 0.59 -1.5
953,275 + Rru_A0798 0.59 +0.1
953,276 - Rru_A0798 0.59 +0.1
953,276 - Rru_A0798 0.59 -2.1
953,276 - Rru_A0798 0.59 +0.1
953,276 - Rru_A0798 0.59 +0.1
953,276 - Rru_A0798 0.59 +0.1
953,276 - Rru_A0798 0.59 -1.9
953,276 - Rru_A0798 0.59 -1.3
953,276 - Rru_A0798 0.59 -1.8
953,936 + Rru_A0799 0.11 +0.1
953,946 + Rru_A0799 0.11 -1.1
954,218 + Rru_A0799 0.29 -1.0
954,332 + Rru_A0799 0.36 -1.8
954,332 + Rru_A0799 0.36 +0.1
954,332 + Rru_A0799 0.36 -1.0
954,418 + Rru_A0799 0.41 -1.5
954,441 + Rru_A0799 0.42 -1.8
954,441 + Rru_A0799 0.42 -1.2
954,441 + Rru_A0799 0.42 +0.1
954,442 - Rru_A0799 0.43 -3.0
954,442 - Rru_A0799 0.43 -0.4
954,444 + Rru_A0799 0.43 -1.8
954,444 + Rru_A0799 0.43 -0.8
954,444 + Rru_A0799 0.43 -0.7
954,444 + Rru_A0799 0.43 +0.1
954,444 + Rru_A0799 0.43 +0.3
954,444 + Rru_A0799 0.43 +0.1
954,444 + Rru_A0799 0.43 -1.6
954,445 - Rru_A0799 0.43 -1.1
954,445 - Rru_A0799 0.43 -1.0
954,485 + Rru_A0799 0.45 -0.4
954,596 + Rru_A0799 0.52 -1.9
954,597 - Rru_A0799 0.52 -0.9
954,597 - Rru_A0799 0.52 -1.5
954,624 + Rru_A0799 0.54 +0.1
954,625 - Rru_A0799 0.54 +0.1
954,625 - Rru_A0799 0.54 +0.1
954,628 - Rru_A0799 0.54 +0.1
954,628 - Rru_A0799 0.54 -1.0
954,702 + Rru_A0799 0.59 +0.1
954,702 + Rru_A0799 0.59 -1.9
954,703 - Rru_A0799 0.59 -0.5
954,703 - Rru_A0799 0.59 -0.8
954,990 + Rru_A0799 0.77 +0.1
954,990 + Rru_A0799 0.77 -2.9
954,990 + Rru_A0799 0.77 +1.1
954,991 - Rru_A0799 0.77 -1.3
955,065 + Rru_A0799 0.82 -0.2
955,066 - Rru_A0799 0.82 -1.6
955,066 - Rru_A0799 0.82 +0.1
955,206 + -1.3
955,206 + -2.5
955,325 + +0.1
955,325 + -1.2
955,326 - -0.9
955,335 + -1.6
955,356 + +0.1
955,357 - -1.8
955,357 - +0.1
955,357 - +0.1
955,357 - -1.3
955,357 - +0.1
955,357 - +0.7
955,357 - -1.2
955,799 + Rru_A0800 0.41 -0.2
955,825 + Rru_A0800 0.43 -0.8
955,825 + Rru_A0800 0.43 +0.1
955,825 + Rru_A0800 0.43 -2.0
955,826 - Rru_A0800 0.43 -1.2
955,826 - Rru_A0800 0.43 -0.9
955,848 + Rru_A0800 0.45 +0.1
955,896 + Rru_A0800 0.50 +0.1
955,945 - Rru_A0800 0.54 -0.1
956,062 - Rru_A0800 0.65 +0.1
956,064 + Rru_A0800 0.66 -0.7
956,127 + Rru_A0800 0.71 -2.9
956,127 + Rru_A0800 0.71 -1.4
956,127 + Rru_A0800 0.71 +0.1
956,127 + Rru_A0800 0.71 +0.1
956,127 + Rru_A0800 0.71 -1.0
956,128 - Rru_A0800 0.72 -1.6
956,128 - Rru_A0800 0.72 -1.1
956,128 - Rru_A0800 0.72 +0.1
956,232 + Rru_A0800 0.81 +0.1
956,232 + Rru_A0800 0.81 +0.1
956,232 + Rru_A0800 0.81 +0.1
956,233 - Rru_A0800 0.81 +0.1
956,233 - Rru_A0800 0.81 -0.7
956,233 - Rru_A0800 0.81 +0.1
956,233 - Rru_A0800 0.81 -1.0
956,298 + Rru_A0800 0.87 -1.4
956,298 + Rru_A0800 0.87 -1.6
956,298 + Rru_A0800 0.87 +0.1
956,298 + Rru_A0800 0.87 +0.1
956,299 - Rru_A0800 0.87 +0.1
956,299 - Rru_A0800 0.87 -0.9
956,299 - Rru_A0800 0.87 +0.1
956,299 - Rru_A0800 0.87 +0.1
956,299 - Rru_A0800 0.87 -0.9
956,299 - Rru_A0800 0.87 -1.4

Or see this region's nucleotide sequence