Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0774

Experiment: acetate; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0773 and Rru_A0774 are separated by 30 nucleotidesRru_A0774 and Rru_A0775 are separated by 260 nucleotides Rru_A0773: Rru_A0773 - Nitrogenase (NCBI), at 923,424 to 924,887 _A0773 Rru_A0774: Rru_A0774 - O-acetylhomoserine/O-acetylserine sulfhydrylase (NCBI), at 924,918 to 926,234 _A0774 Rru_A0775: Rru_A0775 - 2OG-Fe(II) oxygenase (NCBI), at 926,495 to 927,526 _A0775 Position (kb) 924 925 926 927Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 923.965 kb on + strand, within Rru_A0773at 923.965 kb on + strand, within Rru_A0773at 923.965 kb on + strand, within Rru_A0773at 923.965 kb on + strand, within Rru_A0773at 923.965 kb on + strand, within Rru_A0773at 923.965 kb on + strand, within Rru_A0773at 923.966 kb on - strand, within Rru_A0773at 923.966 kb on - strand, within Rru_A0773at 924.122 kb on + strand, within Rru_A0773at 924.122 kb on + strand, within Rru_A0773at 924.122 kb on + strand, within Rru_A0773at 924.122 kb on + strand, within Rru_A0773at 924.122 kb on + strand, within Rru_A0773at 924.123 kb on - strand, within Rru_A0773at 924.123 kb on - strand, within Rru_A0773at 924.123 kb on - strand, within Rru_A0773at 924.123 kb on - strand, within Rru_A0773at 924.257 kb on + strand, within Rru_A0773at 924.488 kb on - strand, within Rru_A0773at 924.817 kb on + strandat 924.818 kb on - strandat 925.105 kb on + strand, within Rru_A0774at 925.105 kb on + strand, within Rru_A0774at 925.105 kb on + strand, within Rru_A0774at 925.106 kb on - strand, within Rru_A0774at 925.106 kb on - strand, within Rru_A0774at 925.106 kb on - strand, within Rru_A0774at 925.198 kb on + strand, within Rru_A0774at 925.198 kb on + strand, within Rru_A0774at 925.199 kb on - strand, within Rru_A0774at 925.199 kb on - strand, within Rru_A0774at 925.199 kb on - strand, within Rru_A0774at 925.279 kb on + strand, within Rru_A0774at 925.280 kb on - strand, within Rru_A0774at 925.398 kb on + strand, within Rru_A0774at 925.399 kb on - strand, within Rru_A0774at 925.421 kb on + strand, within Rru_A0774at 925.421 kb on + strand, within Rru_A0774at 925.423 kb on + strand, within Rru_A0774at 925.423 kb on + strand, within Rru_A0774at 925.423 kb on + strand, within Rru_A0774at 925.424 kb on - strand, within Rru_A0774at 925.424 kb on - strand, within Rru_A0774at 925.424 kb on - strand, within Rru_A0774at 925.424 kb on - strand, within Rru_A0774at 925.424 kb on - strand, within Rru_A0774at 925.424 kb on - strand, within Rru_A0774at 925.424 kb on - strand, within Rru_A0774at 925.474 kb on + strand, within Rru_A0774at 925.475 kb on - strand, within Rru_A0774at 925.585 kb on + strand, within Rru_A0774at 925.585 kb on + strand, within Rru_A0774at 925.586 kb on - strand, within Rru_A0774at 925.586 kb on - strand, within Rru_A0774at 925.586 kb on - strand, within Rru_A0774at 925.586 kb on - strand, within Rru_A0774at 925.586 kb on - strand, within Rru_A0774at 925.600 kb on + strand, within Rru_A0774at 925.600 kb on + strand, within Rru_A0774at 925.601 kb on - strand, within Rru_A0774at 925.601 kb on - strand, within Rru_A0774at 925.656 kb on - strand, within Rru_A0774at 925.658 kb on + strand, within Rru_A0774at 925.754 kb on - strand, within Rru_A0774at 925.754 kb on - strand, within Rru_A0774at 925.754 kb on - strand, within Rru_A0774at 925.756 kb on + strand, within Rru_A0774at 925.756 kb on + strand, within Rru_A0774at 925.756 kb on + strand, within Rru_A0774at 925.757 kb on - strand, within Rru_A0774at 925.877 kb on - strand, within Rru_A0774at 925.898 kb on + strand, within Rru_A0774at 925.898 kb on + strand, within Rru_A0774at 925.898 kb on + strand, within Rru_A0774at 925.898 kb on + strand, within Rru_A0774at 925.898 kb on + strand, within Rru_A0774at 925.899 kb on - strand, within Rru_A0774at 925.899 kb on - strand, within Rru_A0774at 925.899 kb on - strand, within Rru_A0774at 925.901 kb on + strand, within Rru_A0774at 926.039 kb on + strand, within Rru_A0774at 926.041 kb on + strand, within Rru_A0774at 926.042 kb on - strand, within Rru_A0774at 926.104 kb on + strandat 926.104 kb on + strandat 926.104 kb on + strandat 926.104 kb on + strandat 926.105 kb on - strandat 926.435 kb on + strandat 926.621 kb on + strand, within Rru_A0775at 926.622 kb on - strand, within Rru_A0775at 926.622 kb on - strand, within Rru_A0775at 926.750 kb on + strand, within Rru_A0775at 926.750 kb on + strand, within Rru_A0775at 926.752 kb on + strand, within Rru_A0775at 926.753 kb on - strand, within Rru_A0775at 926.753 kb on - strand, within Rru_A0775at 926.753 kb on - strand, within Rru_A0775at 927.018 kb on - strand, within Rru_A0775at 927.018 kb on - strand, within Rru_A0775

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 18 uM
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923,965 + Rru_A0773 0.37 -1.3
923,965 + Rru_A0773 0.37 -1.5
923,965 + Rru_A0773 0.37 +0.1
923,965 + Rru_A0773 0.37 -1.2
923,965 + Rru_A0773 0.37 -3.9
923,965 + Rru_A0773 0.37 -1.1
923,966 - Rru_A0773 0.37 +0.1
923,966 - Rru_A0773 0.37 +0.1
924,122 + Rru_A0773 0.48 -1.3
924,122 + Rru_A0773 0.48 -0.3
924,122 + Rru_A0773 0.48 -2.8
924,122 + Rru_A0773 0.48 -2.9
924,122 + Rru_A0773 0.48 -1.4
924,123 - Rru_A0773 0.48 +0.1
924,123 - Rru_A0773 0.48 -0.6
924,123 - Rru_A0773 0.48 +0.1
924,123 - Rru_A0773 0.48 -2.1
924,257 + Rru_A0773 0.57 -0.9
924,488 - Rru_A0773 0.73 -1.3
924,817 + -2.1
924,818 - +0.1
925,105 + Rru_A0774 0.14 -1.4
925,105 + Rru_A0774 0.14 +0.1
925,105 + Rru_A0774 0.14 -1.0
925,106 - Rru_A0774 0.14 -1.5
925,106 - Rru_A0774 0.14 -2.1
925,106 - Rru_A0774 0.14 -1.8
925,198 + Rru_A0774 0.21 -1.2
925,198 + Rru_A0774 0.21 -3.0
925,199 - Rru_A0774 0.21 +0.1
925,199 - Rru_A0774 0.21 -0.8
925,199 - Rru_A0774 0.21 -1.6
925,279 + Rru_A0774 0.27 -0.9
925,280 - Rru_A0774 0.27 +0.1
925,398 + Rru_A0774 0.36 -0.5
925,399 - Rru_A0774 0.37 -1.1
925,421 + Rru_A0774 0.38 +0.1
925,421 + Rru_A0774 0.38 +0.7
925,423 + Rru_A0774 0.38 -1.5
925,423 + Rru_A0774 0.38 -0.9
925,423 + Rru_A0774 0.38 -2.1
925,424 - Rru_A0774 0.38 -1.9
925,424 - Rru_A0774 0.38 -1.0
925,424 - Rru_A0774 0.38 -1.2
925,424 - Rru_A0774 0.38 -0.4
925,424 - Rru_A0774 0.38 +0.1
925,424 - Rru_A0774 0.38 -1.3
925,424 - Rru_A0774 0.38 +0.1
925,474 + Rru_A0774 0.42 +0.1
925,475 - Rru_A0774 0.42 -1.4
925,585 + Rru_A0774 0.51 -1.9
925,585 + Rru_A0774 0.51 -0.8
925,586 - Rru_A0774 0.51 +0.3
925,586 - Rru_A0774 0.51 +0.1
925,586 - Rru_A0774 0.51 +0.1
925,586 - Rru_A0774 0.51 -0.6
925,586 - Rru_A0774 0.51 -1.5
925,600 + Rru_A0774 0.52 -0.9
925,600 + Rru_A0774 0.52 -1.5
925,601 - Rru_A0774 0.52 +0.1
925,601 - Rru_A0774 0.52 +0.1
925,656 - Rru_A0774 0.56 -1.2
925,658 + Rru_A0774 0.56 -0.8
925,754 - Rru_A0774 0.63 -1.4
925,754 - Rru_A0774 0.63 +0.1
925,754 - Rru_A0774 0.63 -0.9
925,756 + Rru_A0774 0.64 +0.1
925,756 + Rru_A0774 0.64 -1.3
925,756 + Rru_A0774 0.64 -1.5
925,757 - Rru_A0774 0.64 -0.4
925,877 - Rru_A0774 0.73 +0.1
925,898 + Rru_A0774 0.74 +0.1
925,898 + Rru_A0774 0.74 -1.1
925,898 + Rru_A0774 0.74 +0.1
925,898 + Rru_A0774 0.74 +0.1
925,898 + Rru_A0774 0.74 -2.3
925,899 - Rru_A0774 0.74 +0.1
925,899 - Rru_A0774 0.74 +0.1
925,899 - Rru_A0774 0.74 -1.1
925,901 + Rru_A0774 0.75 -0.9
926,039 + Rru_A0774 0.85 -2.0
926,041 + Rru_A0774 0.85 +0.1
926,042 - Rru_A0774 0.85 +0.1
926,104 + -1.3
926,104 + -1.8
926,104 + -0.9
926,104 + -0.2
926,105 - -0.9
926,435 + +0.1
926,621 + Rru_A0775 0.12 -1.1
926,622 - Rru_A0775 0.12 +0.4
926,622 - Rru_A0775 0.12 -1.6
926,750 + Rru_A0775 0.25 +0.1
926,750 + Rru_A0775 0.25 -1.9
926,752 + Rru_A0775 0.25 -1.1
926,753 - Rru_A0775 0.25 -1.2
926,753 - Rru_A0775 0.25 -1.3
926,753 - Rru_A0775 0.25 +0.1
927,018 - Rru_A0775 0.51 -1.2
927,018 - Rru_A0775 0.51 +0.1

Or see this region's nucleotide sequence