Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0717

Experiment: acetate; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0716 and Rru_A0717 are separated by 207 nucleotidesRru_A0717 and Rru_A0718 are separated by 764 nucleotides Rru_A0716: Rru_A0716 - Adenylosuccinate lyase (NCBI), at 842,843 to 844,156 _A0716 Rru_A0717: Rru_A0717 - phage repressor (NCBI), at 844,364 to 845,083 _A0717 Rru_A0718: Rru_A0718 - chemotaxis sensory transducer (NCBI), at 845,848 to 847,857 _A0718 Position (kb) 844 845 846Strain fitness (log2 ratio) -2 -1 0 1at 844.204 kb on - strandat 844.206 kb on - strandat 844.206 kb on - strandat 844.206 kb on - strandat 844.366 kb on - strandat 844.366 kb on - strandat 844.449 kb on + strand, within Rru_A0717at 844.753 kb on + strand, within Rru_A0717at 844.754 kb on - strand, within Rru_A0717at 844.754 kb on - strand, within Rru_A0717at 844.817 kb on + strand, within Rru_A0717at 844.817 kb on + strand, within Rru_A0717at 844.818 kb on - strand, within Rru_A0717at 844.818 kb on - strand, within Rru_A0717at 844.818 kb on - strand, within Rru_A0717at 845.062 kb on + strandat 845.177 kb on - strandat 845.238 kb on + strandat 845.315 kb on - strandat 845.411 kb on + strandat 845.440 kb on + strandat 845.564 kb on - strandat 845.601 kb on - strandat 845.703 kb on - strandat 845.703 kb on - strandat 845.703 kb on - strandat 845.703 kb on - strandat 845.705 kb on + strandat 845.705 kb on + strandat 845.706 kb on - strandat 845.778 kb on + strandat 845.860 kb on - strandat 845.865 kb on + strandat 845.885 kb on + strandat 845.946 kb on + strandat 846.066 kb on - strand, within Rru_A0718

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 18 uM
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844,204 - +0.0
844,206 - -0.7
844,206 - -1.0
844,206 - -2.2
844,366 - -2.5
844,366 - +0.0
844,449 + Rru_A0717 0.12 -1.3
844,753 + Rru_A0717 0.54 +0.0
844,754 - Rru_A0717 0.54 -1.1
844,754 - Rru_A0717 0.54 +0.0
844,817 + Rru_A0717 0.63 +0.0
844,817 + Rru_A0717 0.63 -2.6
844,818 - Rru_A0717 0.63 -1.3
844,818 - Rru_A0717 0.63 -1.6
844,818 - Rru_A0717 0.63 +0.0
845,062 + -1.1
845,177 - +0.0
845,238 + -2.6
845,315 - +0.3
845,411 + -1.5
845,440 + +0.0
845,564 - +0.0
845,601 - +0.0
845,703 - -1.6
845,703 - +0.0
845,703 - +0.0
845,703 - +0.0
845,705 + +0.0
845,705 + -1.3
845,706 - +0.0
845,778 + -1.1
845,860 - -1.3
845,865 + -1.7
845,885 + -2.1
845,946 + -0.5
846,066 - Rru_A0718 0.11 +0.0

Or see this region's nucleotide sequence