Experiment: acetate; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0716 and Rru_A0717 are separated by 207 nucleotides Rru_A0717 and Rru_A0718 are separated by 764 nucleotides
Rru_A0716: Rru_A0716 - Adenylosuccinate lyase (NCBI), at 842,843 to 844,156
_A0716
Rru_A0717: Rru_A0717 - phage repressor (NCBI), at 844,364 to 845,083
_A0717
Rru_A0718: Rru_A0718 - chemotaxis sensory transducer (NCBI), at 845,848 to 847,857
_A0718
Position (kb)
844
845
846 Strain fitness (log2 ratio)
-2
-1
0
1 at 844.204 kb on - strand at 844.206 kb on - strand at 844.206 kb on - strand at 844.206 kb on - strand at 844.366 kb on - strand at 844.366 kb on - strand at 844.449 kb on + strand, within Rru_A0717 at 844.753 kb on + strand, within Rru_A0717 at 844.754 kb on - strand, within Rru_A0717 at 844.754 kb on - strand, within Rru_A0717 at 844.817 kb on + strand, within Rru_A0717 at 844.817 kb on + strand, within Rru_A0717 at 844.818 kb on - strand, within Rru_A0717 at 844.818 kb on - strand, within Rru_A0717 at 844.818 kb on - strand, within Rru_A0717 at 845.062 kb on + strand at 845.177 kb on - strand at 845.238 kb on + strand at 845.315 kb on - strand at 845.411 kb on + strand at 845.440 kb on + strand at 845.564 kb on - strand at 845.601 kb on - strand at 845.703 kb on - strand at 845.703 kb on - strand at 845.703 kb on - strand at 845.703 kb on - strand at 845.705 kb on + strand at 845.705 kb on + strand at 845.706 kb on - strand at 845.778 kb on + strand at 845.860 kb on - strand at 845.865 kb on + strand at 845.885 kb on + strand at 845.946 kb on + strand at 846.066 kb on - strand, within Rru_A0718
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 18 uM remove 844,204 - +0.0 844,206 - -0.7 844,206 - -1.0 844,206 - -2.2 844,366 - -2.5 844,366 - +0.0 844,449 + Rru_A0717 0.12 -1.3 844,753 + Rru_A0717 0.54 +0.0 844,754 - Rru_A0717 0.54 -1.1 844,754 - Rru_A0717 0.54 +0.0 844,817 + Rru_A0717 0.63 +0.0 844,817 + Rru_A0717 0.63 -2.6 844,818 - Rru_A0717 0.63 -1.3 844,818 - Rru_A0717 0.63 -1.6 844,818 - Rru_A0717 0.63 +0.0 845,062 + -1.1 845,177 - +0.0 845,238 + -2.6 845,315 - +0.3 845,411 + -1.5 845,440 + +0.0 845,564 - +0.0 845,601 - +0.0 845,703 - -1.6 845,703 - +0.0 845,703 - +0.0 845,703 - +0.0 845,705 + +0.0 845,705 + -1.3 845,706 - +0.0 845,778 + -1.1 845,860 - -1.3 845,865 + -1.7 845,885 + -2.1 845,946 + -0.5 846,066 - Rru_A0718 0.11 +0.0
Or see this region's nucleotide sequence