Experiment: acetate; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0579 and Rru_A0580 are separated by 91 nucleotides Rru_A0580 and Rru_A0581 are separated by 173 nucleotides
Rru_A0579: Rru_A0579 - Glycosyl transferase, group 1 (NCBI), at 688,229 to 689,302
_A0579
Rru_A0580: Rru_A0580 - OsmC-like protein (NCBI), at 689,394 to 689,828
_A0580
Rru_A0581: Rru_A0581 - Three-deoxy-D-manno-octulosonic-acidtransferase-like (NCBI), at 690,002 to 691,318
_A0581
Position (kb) 689
690 Strain fitness (log2 ratio) -2
-1
0
1 at 688.485 kb on + strand, within Rru_A0579 at 688.485 kb on + strand, within Rru_A0579 at 688.486 kb on - strand, within Rru_A0579 at 688.500 kb on - strand, within Rru_A0579 at 688.556 kb on + strand, within Rru_A0579 at 688.595 kb on + strand, within Rru_A0579 at 688.596 kb on - strand, within Rru_A0579 at 688.596 kb on - strand, within Rru_A0579 at 688.596 kb on - strand, within Rru_A0579 at 688.790 kb on + strand, within Rru_A0579 at 688.790 kb on + strand, within Rru_A0579 at 688.790 kb on + strand, within Rru_A0579 at 688.791 kb on - strand, within Rru_A0579 at 688.791 kb on - strand, within Rru_A0579 at 688.955 kb on + strand, within Rru_A0579 at 688.956 kb on - strand, within Rru_A0579 at 688.956 kb on - strand, within Rru_A0579 at 689.054 kb on + strand, within Rru_A0579 at 689.301 kb on - strand at 689.311 kb on + strand at 689.311 kb on + strand at 689.311 kb on + strand at 689.311 kb on + strand at 689.311 kb on + strand at 689.312 kb on - strand at 689.312 kb on - strand at 689.312 kb on - strand at 689.312 kb on - strand at 689.313 kb on + strand at 689.313 kb on + strand at 689.313 kb on + strand at 689.313 kb on + strand at 689.314 kb on - strand at 689.314 kb on - strand at 689.484 kb on + strand, within Rru_A0580 at 689.484 kb on + strand, within Rru_A0580 at 689.484 kb on + strand, within Rru_A0580 at 689.484 kb on + strand, within Rru_A0580 at 689.601 kb on - strand, within Rru_A0580 at 689.826 kb on + strand at 689.826 kb on + strand at 689.826 kb on + strand at 689.826 kb on + strand at 689.826 kb on + strand at 689.826 kb on + strand at 689.827 kb on - strand at 689.827 kb on - strand at 689.966 kb on + strand at 689.966 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 18 uM remove 688,485 + Rru_A0579 0.24 +0.0 688,485 + Rru_A0579 0.24 -1.6 688,486 - Rru_A0579 0.24 -2.1 688,500 - Rru_A0579 0.25 +0.0 688,556 + Rru_A0579 0.30 -0.2 688,595 + Rru_A0579 0.34 +0.0 688,596 - Rru_A0579 0.34 -1.9 688,596 - Rru_A0579 0.34 -1.2 688,596 - Rru_A0579 0.34 -0.5 688,790 + Rru_A0579 0.52 -1.3 688,790 + Rru_A0579 0.52 +0.0 688,790 + Rru_A0579 0.52 +0.0 688,791 - Rru_A0579 0.52 +0.0 688,791 - Rru_A0579 0.52 -0.1 688,955 + Rru_A0579 0.68 -0.6 688,956 - Rru_A0579 0.68 -1.0 688,956 - Rru_A0579 0.68 -0.9 689,054 + Rru_A0579 0.77 -1.1 689,301 - -1.9 689,311 + -1.1 689,311 + +0.0 689,311 + +0.0 689,311 + -2.0 689,311 + +0.0 689,312 - +0.0 689,312 - +0.0 689,312 - -0.5 689,312 - -1.1 689,313 + +0.0 689,313 + +0.0 689,313 + +0.1 689,313 + +0.0 689,314 - +0.0 689,314 - -1.8 689,484 + Rru_A0580 0.21 -0.7 689,484 + Rru_A0580 0.21 +0.0 689,484 + Rru_A0580 0.21 +0.0 689,484 + Rru_A0580 0.21 +0.0 689,601 - Rru_A0580 0.48 -0.5 689,826 + +0.2 689,826 + +0.0 689,826 + -2.2 689,826 + -2.0 689,826 + +0.0 689,826 + -2.1 689,827 - +0.0 689,827 - +0.0 689,966 + -2.7 689,966 + -1.0
Or see this region's nucleotide sequence