Experiment: acetate; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0540 and Rru_A0541 are separated by 49 nucleotides Rru_A0541 and Rru_A0542 are separated by 209 nucleotides Rru_A0542 and Rru_A0543 are separated by 12 nucleotides
Rru_A0540: Rru_A0540 - Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI), at 636,257 to 637,594
_A0540
Rru_A0541: Rru_A0541 - MotA/TolQ/ExbB proton channel (NCBI), at 637,644 to 638,462
_A0541
Rru_A0542: Rru_A0542 - Surface presentation of antigens (SPOA) protein (NCBI), at 638,672 to 639,019
_A0542
Rru_A0543: Rru_A0543 - hypothetical protein (NCBI), at 639,032 to 639,766
_A0543
Position (kb) 637
638
639 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 636.805 kb on + strand, within Rru_A0540 at 637.228 kb on + strand, within Rru_A0540 at 637.228 kb on + strand, within Rru_A0540 at 637.229 kb on - strand, within Rru_A0540 at 637.229 kb on - strand, within Rru_A0540 at 637.230 kb on + strand, within Rru_A0540 at 637.230 kb on + strand, within Rru_A0540 at 637.231 kb on - strand, within Rru_A0540 at 637.308 kb on + strand, within Rru_A0540 at 637.308 kb on + strand, within Rru_A0540 at 637.308 kb on + strand, within Rru_A0540 at 637.308 kb on + strand, within Rru_A0540 at 637.308 kb on + strand, within Rru_A0540 at 637.309 kb on - strand, within Rru_A0540 at 637.309 kb on - strand, within Rru_A0540 at 637.309 kb on - strand, within Rru_A0540 at 637.652 kb on - strand at 637.652 kb on - strand at 637.655 kb on - strand at 637.655 kb on - strand at 637.655 kb on - strand at 637.655 kb on - strand at 637.750 kb on + strand, within Rru_A0541 at 637.751 kb on - strand, within Rru_A0541 at 637.751 kb on - strand, within Rru_A0541 at 637.751 kb on - strand, within Rru_A0541 at 637.840 kb on + strand, within Rru_A0541 at 637.840 kb on + strand, within Rru_A0541 at 637.840 kb on + strand, within Rru_A0541 at 637.840 kb on + strand, within Rru_A0541 at 637.840 kb on + strand, within Rru_A0541 at 637.841 kb on - strand, within Rru_A0541 at 637.841 kb on - strand, within Rru_A0541 at 637.841 kb on - strand, within Rru_A0541 at 637.841 kb on - strand, within Rru_A0541 at 638.019 kb on - strand, within Rru_A0541 at 638.612 kb on + strand at 638.769 kb on + strand, within Rru_A0542 at 638.770 kb on - strand, within Rru_A0542 at 638.852 kb on - strand, within Rru_A0542 at 638.852 kb on - strand, within Rru_A0542 at 638.895 kb on + strand, within Rru_A0542 at 638.896 kb on - strand, within Rru_A0542 at 639.033 kb on + strand at 639.034 kb on - strand at 639.243 kb on + strand, within Rru_A0543 at 639.287 kb on - strand, within Rru_A0543 at 639.454 kb on + strand, within Rru_A0543
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 18 uM remove 636,805 + Rru_A0540 0.41 -1.0 637,228 + Rru_A0540 0.73 +0.0 637,228 + Rru_A0540 0.73 +0.0 637,229 - Rru_A0540 0.73 -1.8 637,229 - Rru_A0540 0.73 +3.4 637,230 + Rru_A0540 0.73 +0.0 637,230 + Rru_A0540 0.73 +0.0 637,231 - Rru_A0540 0.73 -1.4 637,308 + Rru_A0540 0.79 -1.0 637,308 + Rru_A0540 0.79 -1.2 637,308 + Rru_A0540 0.79 +0.0 637,308 + Rru_A0540 0.79 -1.2 637,308 + Rru_A0540 0.79 +0.0 637,309 - Rru_A0540 0.79 +0.0 637,309 - Rru_A0540 0.79 -0.6 637,309 - Rru_A0540 0.79 -1.3 637,652 - -1.1 637,652 - -1.3 637,655 - +0.0 637,655 - -0.3 637,655 - -1.7 637,655 - +0.0 637,750 + Rru_A0541 0.13 -1.6 637,751 - Rru_A0541 0.13 -1.4 637,751 - Rru_A0541 0.13 -0.6 637,751 - Rru_A0541 0.13 +0.0 637,840 + Rru_A0541 0.24 -1.0 637,840 + Rru_A0541 0.24 -0.9 637,840 + Rru_A0541 0.24 -1.7 637,840 + Rru_A0541 0.24 -1.7 637,840 + Rru_A0541 0.24 +0.0 637,841 - Rru_A0541 0.24 -1.7 637,841 - Rru_A0541 0.24 -2.9 637,841 - Rru_A0541 0.24 -1.5 637,841 - Rru_A0541 0.24 -1.2 638,019 - Rru_A0541 0.46 +0.0 638,612 + -1.2 638,769 + Rru_A0542 0.28 -0.6 638,770 - Rru_A0542 0.28 -2.6 638,852 - Rru_A0542 0.52 -1.9 638,852 - Rru_A0542 0.52 +0.0 638,895 + Rru_A0542 0.64 -1.3 638,896 - Rru_A0542 0.64 -1.8 639,033 + +0.0 639,034 - +0.0 639,243 + Rru_A0543 0.29 -1.8 639,287 - Rru_A0543 0.35 -0.4 639,454 + Rru_A0543 0.57 +0.0
Or see this region's nucleotide sequence