Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0524

Experiment: acetate; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0523 and Rru_A0524 are separated by 4 nucleotidesRru_A0524 and Rru_A0525 are separated by 33 nucleotidesRru_A0525 and Rru_A0526 are separated by 243 nucleotides Rru_A0523: Rru_A0523 - Two component CheB methylesterase (NCBI), at 617,675 to 618,838 _A0523 Rru_A0524: Rru_A0524 - MCP methyltransferase, CheR-type (NCBI), at 618,843 to 619,685 _A0524 Rru_A0525: Rru_A0525 - Two component Transcriptional regulator, Winged helix family (NCBI), at 619,719 to 620,438 _A0525 Rru_A0526: Rru_A0526 - ATPase FliI/YscN (NCBI), at 620,682 to 622,109 _A0526 Position (kb) 618 619 620Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 617.925 kb on + strand, within Rru_A0523at 617.925 kb on + strand, within Rru_A0523at 617.926 kb on - strand, within Rru_A0523at 617.926 kb on - strand, within Rru_A0523at 617.926 kb on - strand, within Rru_A0523at 618.373 kb on + strand, within Rru_A0523at 618.373 kb on + strand, within Rru_A0523at 618.373 kb on + strand, within Rru_A0523at 618.373 kb on + strand, within Rru_A0523at 618.374 kb on - strand, within Rru_A0523at 618.374 kb on - strand, within Rru_A0523at 618.374 kb on - strand, within Rru_A0523at 618.409 kb on + strand, within Rru_A0523at 618.410 kb on - strand, within Rru_A0523at 618.410 kb on - strand, within Rru_A0523at 618.475 kb on + strand, within Rru_A0523at 618.476 kb on - strand, within Rru_A0523at 618.476 kb on - strand, within Rru_A0523at 618.479 kb on + strand, within Rru_A0523at 618.479 kb on + strand, within Rru_A0523at 618.479 kb on + strand, within Rru_A0523at 618.479 kb on + strand, within Rru_A0523at 618.479 kb on + strand, within Rru_A0523at 618.479 kb on + strand, within Rru_A0523at 618.479 kb on + strand, within Rru_A0523at 618.480 kb on - strand, within Rru_A0523at 618.480 kb on - strand, within Rru_A0523at 618.480 kb on - strand, within Rru_A0523at 618.480 kb on - strand, within Rru_A0523at 618.480 kb on - strand, within Rru_A0523at 618.480 kb on - strand, within Rru_A0523at 618.498 kb on - strand, within Rru_A0523at 618.498 kb on - strand, within Rru_A0523at 618.614 kb on + strand, within Rru_A0523at 618.614 kb on + strand, within Rru_A0523at 618.809 kb on + strandat 618.809 kb on + strandat 618.810 kb on - strandat 618.810 kb on - strandat 618.888 kb on - strandat 618.888 kb on - strandat 618.921 kb on + strandat 618.921 kb on + strandat 618.922 kb on - strandat 618.922 kb on - strandat 619.115 kb on + strand, within Rru_A0524at 619.188 kb on + strand, within Rru_A0524at 619.189 kb on - strand, within Rru_A0524at 619.189 kb on - strand, within Rru_A0524at 619.302 kb on + strand, within Rru_A0524at 619.414 kb on - strand, within Rru_A0524at 619.414 kb on - strand, within Rru_A0524at 619.414 kb on - strand, within Rru_A0524at 619.414 kb on - strand, within Rru_A0524at 619.563 kb on + strand, within Rru_A0524at 619.563 kb on + strand, within Rru_A0524at 619.564 kb on - strand, within Rru_A0524at 619.635 kb on + strandat 619.784 kb on - strandat 619.784 kb on - strandat 619.784 kb on - strandat 619.811 kb on - strand, within Rru_A0525at 619.811 kb on - strand, within Rru_A0525at 619.811 kb on - strand, within Rru_A0525at 619.904 kb on - strand, within Rru_A0525at 619.975 kb on + strand, within Rru_A0525at 619.976 kb on - strand, within Rru_A0525at 619.976 kb on - strand, within Rru_A0525at 620.126 kb on + strand, within Rru_A0525at 620.126 kb on + strand, within Rru_A0525at 620.146 kb on + strand, within Rru_A0525at 620.147 kb on - strand, within Rru_A0525at 620.147 kb on - strand, within Rru_A0525at 620.147 kb on - strand, within Rru_A0525at 620.147 kb on - strand, within Rru_A0525at 620.305 kb on + strand, within Rru_A0525at 620.306 kb on - strand, within Rru_A0525at 620.503 kb on + strandat 620.570 kb on - strandat 620.579 kb on - strandat 620.662 kb on + strandat 620.662 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 18 uM
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617,925 + Rru_A0523 0.21 +0.0
617,925 + Rru_A0523 0.21 +0.0
617,926 - Rru_A0523 0.22 -1.6
617,926 - Rru_A0523 0.22 +0.0
617,926 - Rru_A0523 0.22 +0.0
618,373 + Rru_A0523 0.60 -0.9
618,373 + Rru_A0523 0.60 -1.0
618,373 + Rru_A0523 0.60 -2.0
618,373 + Rru_A0523 0.60 -1.2
618,374 - Rru_A0523 0.60 +0.5
618,374 - Rru_A0523 0.60 +0.4
618,374 - Rru_A0523 0.60 -1.0
618,409 + Rru_A0523 0.63 -2.3
618,410 - Rru_A0523 0.63 +0.0
618,410 - Rru_A0523 0.63 -1.7
618,475 + Rru_A0523 0.69 +0.0
618,476 - Rru_A0523 0.69 +0.0
618,476 - Rru_A0523 0.69 +0.0
618,479 + Rru_A0523 0.69 -1.6
618,479 + Rru_A0523 0.69 +0.0
618,479 + Rru_A0523 0.69 -1.1
618,479 + Rru_A0523 0.69 +0.0
618,479 + Rru_A0523 0.69 -2.4
618,479 + Rru_A0523 0.69 +0.0
618,479 + Rru_A0523 0.69 -1.5
618,480 - Rru_A0523 0.69 +0.0
618,480 - Rru_A0523 0.69 -1.2
618,480 - Rru_A0523 0.69 +0.0
618,480 - Rru_A0523 0.69 -1.4
618,480 - Rru_A0523 0.69 -1.2
618,480 - Rru_A0523 0.69 -0.8
618,498 - Rru_A0523 0.71 -0.5
618,498 - Rru_A0523 0.71 -3.1
618,614 + Rru_A0523 0.81 -1.9
618,614 + Rru_A0523 0.81 +0.0
618,809 + -1.0
618,809 + +0.0
618,810 - +0.0
618,810 - -1.5
618,888 - -1.2
618,888 - +0.0
618,921 + +0.0
618,921 + -1.0
618,922 - -1.1
618,922 - +0.3
619,115 + Rru_A0524 0.32 -0.9
619,188 + Rru_A0524 0.41 +0.0
619,189 - Rru_A0524 0.41 +0.0
619,189 - Rru_A0524 0.41 -1.6
619,302 + Rru_A0524 0.54 -2.6
619,414 - Rru_A0524 0.68 -0.3
619,414 - Rru_A0524 0.68 -1.0
619,414 - Rru_A0524 0.68 -1.0
619,414 - Rru_A0524 0.68 +0.0
619,563 + Rru_A0524 0.85 -1.3
619,563 + Rru_A0524 0.85 -3.4
619,564 - Rru_A0524 0.86 -0.7
619,635 + -1.6
619,784 - +0.0
619,784 - -2.1
619,784 - +0.0
619,811 - Rru_A0525 0.13 +0.0
619,811 - Rru_A0525 0.13 -3.5
619,811 - Rru_A0525 0.13 +0.0
619,904 - Rru_A0525 0.26 -2.1
619,975 + Rru_A0525 0.36 -2.8
619,976 - Rru_A0525 0.36 +0.0
619,976 - Rru_A0525 0.36 -1.4
620,126 + Rru_A0525 0.57 -1.0
620,126 + Rru_A0525 0.57 +0.0
620,146 + Rru_A0525 0.59 -2.1
620,147 - Rru_A0525 0.59 +0.0
620,147 - Rru_A0525 0.59 -2.7
620,147 - Rru_A0525 0.59 -1.7
620,147 - Rru_A0525 0.59 +0.0
620,305 + Rru_A0525 0.81 -1.9
620,306 - Rru_A0525 0.82 -4.1
620,503 + -2.2
620,570 - -1.1
620,579 - -2.2
620,662 + -0.6
620,662 + -1.8

Or see this region's nucleotide sequence