Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0378

Experiment: acetate; Light intensity 18 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0377 and Rru_A0378 are separated by 120 nucleotidesRru_A0378 and Rru_A0379 are separated by 80 nucleotidesRru_A0379 and Rru_A0380 are separated by 76 nucleotides Rru_A0377: Rru_A0377 - Signal Transduction Histidine Kinase (STHK), LytS (NCBI), at 453,284 to 455,014 _A0377 Rru_A0378: Rru_A0378 - hypothetical protein (NCBI), at 455,135 to 457,768 _A0378 Rru_A0379: Rru_A0379 - Flavodoxin, long chain (NCBI), at 457,849 to 458,331 _A0379 Rru_A0380: Rru_A0380 - Glyoxalase/bleomycin resistance protein/dioxygenase (NCBI), at 458,408 to 458,764 _A0380 Position (kb) 455 456 457 458Strain fitness (log2 ratio) -3 -2 -1 0 1at 454.143 kb on + strand, within Rru_A0377at 454.143 kb on + strand, within Rru_A0377at 454.143 kb on + strand, within Rru_A0377at 454.144 kb on - strand, within Rru_A0377at 454.144 kb on - strand, within Rru_A0377at 454.189 kb on + strand, within Rru_A0377at 454.207 kb on + strand, within Rru_A0377at 454.208 kb on - strand, within Rru_A0377at 454.208 kb on - strand, within Rru_A0377at 454.208 kb on - strand, within Rru_A0377at 454.290 kb on + strand, within Rru_A0377at 454.291 kb on - strand, within Rru_A0377at 454.291 kb on - strand, within Rru_A0377at 454.336 kb on + strand, within Rru_A0377at 454.630 kb on - strand, within Rru_A0377at 454.630 kb on - strand, within Rru_A0377at 454.711 kb on - strand, within Rru_A0377at 454.834 kb on - strand, within Rru_A0377at 454.834 kb on - strand, within Rru_A0377at 454.870 kb on - strandat 454.870 kb on - strandat 454.882 kb on + strandat 454.882 kb on + strandat 454.883 kb on - strandat 454.945 kb on - strandat 454.945 kb on - strandat 454.959 kb on + strandat 454.959 kb on + strandat 454.960 kb on - strandat 454.960 kb on - strandat 455.034 kb on - strandat 455.034 kb on - strandat 455.057 kb on + strandat 455.271 kb on + strandat 455.393 kb on - strandat 455.393 kb on - strandat 455.529 kb on + strand, within Rru_A0378at 455.529 kb on + strand, within Rru_A0378at 455.529 kb on + strand, within Rru_A0378at 455.530 kb on - strand, within Rru_A0378at 455.530 kb on - strand, within Rru_A0378at 455.530 kb on - strand, within Rru_A0378at 455.847 kb on + strand, within Rru_A0378at 455.847 kb on + strand, within Rru_A0378at 455.848 kb on - strand, within Rru_A0378at 455.848 kb on - strand, within Rru_A0378at 455.848 kb on - strand, within Rru_A0378at 455.910 kb on + strand, within Rru_A0378at 455.910 kb on + strand, within Rru_A0378at 455.911 kb on - strand, within Rru_A0378at 455.911 kb on - strand, within Rru_A0378at 456.066 kb on + strand, within Rru_A0378at 456.067 kb on - strand, within Rru_A0378at 456.067 kb on - strand, within Rru_A0378at 456.081 kb on + strand, within Rru_A0378at 456.081 kb on + strand, within Rru_A0378at 456.082 kb on - strand, within Rru_A0378at 456.082 kb on - strand, within Rru_A0378at 456.120 kb on + strand, within Rru_A0378at 456.120 kb on + strand, within Rru_A0378at 456.120 kb on + strand, within Rru_A0378at 456.120 kb on + strand, within Rru_A0378at 456.120 kb on + strand, within Rru_A0378at 456.120 kb on + strand, within Rru_A0378at 456.121 kb on - strand, within Rru_A0378at 456.246 kb on + strand, within Rru_A0378at 456.246 kb on + strand, within Rru_A0378at 456.246 kb on + strand, within Rru_A0378at 456.246 kb on + strand, within Rru_A0378at 456.247 kb on - strand, within Rru_A0378at 456.247 kb on - strand, within Rru_A0378at 456.247 kb on - strand, within Rru_A0378at 456.430 kb on + strand, within Rru_A0378at 456.677 kb on + strand, within Rru_A0378at 456.678 kb on - strand, within Rru_A0378at 456.815 kb on + strand, within Rru_A0378at 456.816 kb on - strand, within Rru_A0378at 457.061 kb on + strand, within Rru_A0378at 457.061 kb on + strand, within Rru_A0378at 457.061 kb on + strand, within Rru_A0378at 457.061 kb on + strand, within Rru_A0378at 457.062 kb on - strand, within Rru_A0378at 457.062 kb on - strand, within Rru_A0378at 457.062 kb on - strand, within Rru_A0378at 457.062 kb on - strand, within Rru_A0378at 457.063 kb on + strand, within Rru_A0378at 457.063 kb on + strand, within Rru_A0378at 457.064 kb on - strand, within Rru_A0378at 457.064 kb on - strand, within Rru_A0378at 457.333 kb on + strand, within Rru_A0378at 457.333 kb on + strand, within Rru_A0378at 457.333 kb on + strand, within Rru_A0378at 457.333 kb on + strand, within Rru_A0378at 457.333 kb on + strand, within Rru_A0378at 457.333 kb on + strand, within Rru_A0378at 457.333 kb on + strand, within Rru_A0378at 457.334 kb on - strand, within Rru_A0378at 457.334 kb on - strand, within Rru_A0378at 457.334 kb on - strand, within Rru_A0378at 457.334 kb on - strand, within Rru_A0378at 457.334 kb on - strand, within Rru_A0378at 457.334 kb on - strand, within Rru_A0378at 457.386 kb on - strand, within Rru_A0378at 457.386 kb on - strand, within Rru_A0378at 457.470 kb on - strand, within Rru_A0378at 457.502 kb on + strand, within Rru_A0378at 457.831 kb on + strandat 457.831 kb on + strandat 457.831 kb on + strandat 457.832 kb on - strandat 457.832 kb on - strandat 457.832 kb on - strandat 457.857 kb on + strandat 457.868 kb on - strandat 457.868 kb on - strandat 457.868 kb on - strandat 458.005 kb on + strand, within Rru_A0379at 458.005 kb on + strand, within Rru_A0379at 458.005 kb on + strand, within Rru_A0379at 458.153 kb on - strand, within Rru_A0379at 458.153 kb on - strand, within Rru_A0379at 458.209 kb on + strand, within Rru_A0379at 458.215 kb on + strand, within Rru_A0379at 458.215 kb on + strand, within Rru_A0379at 458.215 kb on + strand, within Rru_A0379at 458.215 kb on + strand, within Rru_A0379at 458.216 kb on - strand, within Rru_A0379at 458.216 kb on - strand, within Rru_A0379at 458.216 kb on - strand, within Rru_A0379at 458.216 kb on - strand, within Rru_A0379at 458.216 kb on - strand, within Rru_A0379at 458.216 kb on - strand, within Rru_A0379at 458.217 kb on + strand, within Rru_A0379at 458.217 kb on + strand, within Rru_A0379at 458.217 kb on + strand, within Rru_A0379at 458.217 kb on + strand, within Rru_A0379at 458.217 kb on + strand, within Rru_A0379at 458.217 kb on + strand, within Rru_A0379at 458.217 kb on + strand, within Rru_A0379at 458.218 kb on - strand, within Rru_A0379at 458.218 kb on - strand, within Rru_A0379at 458.218 kb on - strand, within Rru_A0379at 458.218 kb on - strand, within Rru_A0379at 458.218 kb on - strand, within Rru_A0379at 458.218 kb on - strand, within Rru_A0379at 458.218 kb on - strand, within Rru_A0379at 458.221 kb on + strand, within Rru_A0379at 458.222 kb on - strand, within Rru_A0379at 458.222 kb on - strand, within Rru_A0379at 458.222 kb on - strand, within Rru_A0379at 458.222 kb on - strand, within Rru_A0379at 458.222 kb on - strand, within Rru_A0379at 458.222 kb on - strand, within Rru_A0379at 458.444 kb on - strand, within Rru_A0380at 458.444 kb on - strand, within Rru_A0380at 458.444 kb on - strand, within Rru_A0380at 458.446 kb on + strand, within Rru_A0380at 458.446 kb on + strand, within Rru_A0380at 458.446 kb on + strand, within Rru_A0380at 458.446 kb on + strand, within Rru_A0380at 458.489 kb on + strand, within Rru_A0380at 458.489 kb on + strand, within Rru_A0380at 458.489 kb on + strand, within Rru_A0380at 458.490 kb on - strand, within Rru_A0380at 458.490 kb on - strand, within Rru_A0380at 458.490 kb on - strand, within Rru_A0380at 458.611 kb on - strand, within Rru_A0380at 458.618 kb on + strand, within Rru_A0380at 458.618 kb on + strand, within Rru_A0380at 458.618 kb on + strand, within Rru_A0380at 458.618 kb on + strand, within Rru_A0380at 458.618 kb on + strand, within Rru_A0380at 458.618 kb on + strand, within Rru_A0380at 458.618 kb on + strand, within Rru_A0380at 458.618 kb on + strand, within Rru_A0380at 458.619 kb on - strand, within Rru_A0380at 458.749 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 18 uM
remove
454,143 + Rru_A0377 0.50 -2.1
454,143 + Rru_A0377 0.50 +0.1
454,143 + Rru_A0377 0.50 +0.1
454,144 - Rru_A0377 0.50 +0.1
454,144 - Rru_A0377 0.50 +0.1
454,189 + Rru_A0377 0.52 -0.1
454,207 + Rru_A0377 0.53 +0.1
454,208 - Rru_A0377 0.53 -0.9
454,208 - Rru_A0377 0.53 -0.8
454,208 - Rru_A0377 0.53 -0.9
454,290 + Rru_A0377 0.58 -1.1
454,291 - Rru_A0377 0.58 -1.4
454,291 - Rru_A0377 0.58 -0.9
454,336 + Rru_A0377 0.61 -1.1
454,630 - Rru_A0377 0.78 -0.9
454,630 - Rru_A0377 0.78 +0.1
454,711 - Rru_A0377 0.82 +0.1
454,834 - Rru_A0377 0.90 +0.1
454,834 - Rru_A0377 0.90 -0.6
454,870 - -0.6
454,870 - -1.9
454,882 + +0.1
454,882 + -1.0
454,883 - -1.6
454,945 - -2.7
454,945 - -1.8
454,959 + -0.4
454,959 + -1.1
454,960 - -0.7
454,960 - -0.9
455,034 - -1.1
455,034 - +0.1
455,057 + -1.1
455,271 + +0.1
455,393 - +0.1
455,393 - -1.3
455,529 + Rru_A0378 0.15 +0.1
455,529 + Rru_A0378 0.15 -1.3
455,529 + Rru_A0378 0.15 -2.0
455,530 - Rru_A0378 0.15 -1.1
455,530 - Rru_A0378 0.15 -1.0
455,530 - Rru_A0378 0.15 -0.9
455,847 + Rru_A0378 0.27 +0.1
455,847 + Rru_A0378 0.27 -1.4
455,848 - Rru_A0378 0.27 -2.2
455,848 - Rru_A0378 0.27 +0.1
455,848 - Rru_A0378 0.27 -1.3
455,910 + Rru_A0378 0.29 -1.2
455,910 + Rru_A0378 0.29 +0.1
455,911 - Rru_A0378 0.29 +0.1
455,911 - Rru_A0378 0.29 -1.0
456,066 + Rru_A0378 0.35 -0.4
456,067 - Rru_A0378 0.35 +1.1
456,067 - Rru_A0378 0.35 +0.1
456,081 + Rru_A0378 0.36 +0.1
456,081 + Rru_A0378 0.36 +0.1
456,082 - Rru_A0378 0.36 -1.5
456,082 - Rru_A0378 0.36 -2.1
456,120 + Rru_A0378 0.37 +0.1
456,120 + Rru_A0378 0.37 -2.1
456,120 + Rru_A0378 0.37 +0.1
456,120 + Rru_A0378 0.37 -0.9
456,120 + Rru_A0378 0.37 +0.1
456,120 + Rru_A0378 0.37 +0.1
456,121 - Rru_A0378 0.37 -1.9
456,246 + Rru_A0378 0.42 -0.6
456,246 + Rru_A0378 0.42 +0.1
456,246 + Rru_A0378 0.42 +0.1
456,246 + Rru_A0378 0.42 -0.1
456,247 - Rru_A0378 0.42 -0.8
456,247 - Rru_A0378 0.42 +0.1
456,247 - Rru_A0378 0.42 -0.9
456,430 + Rru_A0378 0.49 -2.1
456,677 + Rru_A0378 0.59 -1.4
456,678 - Rru_A0378 0.59 +0.1
456,815 + Rru_A0378 0.64 -0.8
456,816 - Rru_A0378 0.64 +0.1
457,061 + Rru_A0378 0.73 +0.1
457,061 + Rru_A0378 0.73 +0.1
457,061 + Rru_A0378 0.73 +0.1
457,061 + Rru_A0378 0.73 +0.1
457,062 - Rru_A0378 0.73 -2.3
457,062 - Rru_A0378 0.73 -1.1
457,062 - Rru_A0378 0.73 +0.1
457,062 - Rru_A0378 0.73 -1.2
457,063 + Rru_A0378 0.73 -2.2
457,063 + Rru_A0378 0.73 +0.1
457,064 - Rru_A0378 0.73 +0.1
457,064 - Rru_A0378 0.73 -2.6
457,333 + Rru_A0378 0.83 -0.9
457,333 + Rru_A0378 0.83 -1.9
457,333 + Rru_A0378 0.83 +0.1
457,333 + Rru_A0378 0.83 -1.7
457,333 + Rru_A0378 0.83 +0.1
457,333 + Rru_A0378 0.83 -1.5
457,333 + Rru_A0378 0.83 -1.3
457,334 - Rru_A0378 0.83 -1.3
457,334 - Rru_A0378 0.83 -1.5
457,334 - Rru_A0378 0.83 -1.0
457,334 - Rru_A0378 0.83 +0.1
457,334 - Rru_A0378 0.83 -1.9
457,334 - Rru_A0378 0.83 +0.1
457,386 - Rru_A0378 0.85 -1.1
457,386 - Rru_A0378 0.85 -3.5
457,470 - Rru_A0378 0.89 -1.3
457,502 + Rru_A0378 0.90 -1.9
457,831 + +0.2
457,831 + -0.9
457,831 + -0.5
457,832 - +0.1
457,832 - -0.9
457,832 - +0.1
457,857 + -1.7
457,868 - -1.8
457,868 - +0.1
457,868 - +0.1
458,005 + Rru_A0379 0.32 -1.8
458,005 + Rru_A0379 0.32 -1.9
458,005 + Rru_A0379 0.32 -2.0
458,153 - Rru_A0379 0.63 -1.2
458,153 - Rru_A0379 0.63 -1.3
458,209 + Rru_A0379 0.75 -2.1
458,215 + Rru_A0379 0.76 -1.1
458,215 + Rru_A0379 0.76 -1.4
458,215 + Rru_A0379 0.76 -1.2
458,215 + Rru_A0379 0.76 -1.6
458,216 - Rru_A0379 0.76 +0.1
458,216 - Rru_A0379 0.76 -2.5
458,216 - Rru_A0379 0.76 +0.1
458,216 - Rru_A0379 0.76 -1.5
458,216 - Rru_A0379 0.76 +0.1
458,216 - Rru_A0379 0.76 -1.9
458,217 + Rru_A0379 0.76 -0.6
458,217 + Rru_A0379 0.76 +0.1
458,217 + Rru_A0379 0.76 -1.7
458,217 + Rru_A0379 0.76 -1.7
458,217 + Rru_A0379 0.76 -0.9
458,217 + Rru_A0379 0.76 -1.5
458,217 + Rru_A0379 0.76 +0.1
458,218 - Rru_A0379 0.76 -1.1
458,218 - Rru_A0379 0.76 -1.5
458,218 - Rru_A0379 0.76 +0.1
458,218 - Rru_A0379 0.76 -2.0
458,218 - Rru_A0379 0.76 +0.1
458,218 - Rru_A0379 0.76 +0.1
458,218 - Rru_A0379 0.76 +0.1
458,221 + Rru_A0379 0.77 -2.2
458,222 - Rru_A0379 0.77 +0.1
458,222 - Rru_A0379 0.77 +0.1
458,222 - Rru_A0379 0.77 -1.7
458,222 - Rru_A0379 0.77 -1.1
458,222 - Rru_A0379 0.77 -1.4
458,222 - Rru_A0379 0.77 -0.7
458,444 - Rru_A0380 0.10 +0.1
458,444 - Rru_A0380 0.10 -1.7
458,444 - Rru_A0380 0.10 +0.1
458,446 + Rru_A0380 0.11 +0.1
458,446 + Rru_A0380 0.11 -1.7
458,446 + Rru_A0380 0.11 -0.9
458,446 + Rru_A0380 0.11 -1.1
458,489 + Rru_A0380 0.23 -1.3
458,489 + Rru_A0380 0.23 +0.1
458,489 + Rru_A0380 0.23 -1.9
458,490 - Rru_A0380 0.23 +0.1
458,490 - Rru_A0380 0.23 -1.8
458,490 - Rru_A0380 0.23 -0.8
458,611 - Rru_A0380 0.57 -0.8
458,618 + Rru_A0380 0.59 -1.1
458,618 + Rru_A0380 0.59 -0.5
458,618 + Rru_A0380 0.59 -1.1
458,618 + Rru_A0380 0.59 -0.8
458,618 + Rru_A0380 0.59 +0.1
458,618 + Rru_A0380 0.59 +0.1
458,618 + Rru_A0380 0.59 +0.1
458,618 + Rru_A0380 0.59 -1.5
458,619 - Rru_A0380 0.59 -1.6
458,749 - -1.9

Or see this region's nucleotide sequence