Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0245

Experiment: acetate; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0244 and Rru_A0245 are separated by 166 nucleotidesRru_A0245 and Rru_A0246 overlap by 4 nucleotides Rru_A0244: Rru_A0244 - IMP dehydrogenase (NCBI), at 303,031 to 304,494 _A0244 Rru_A0245: Rru_A0245 - Ribosomal RNA methyltransferase RrmJ/FtsJ (NCBI), at 304,661 to 305,452 _A0245 Rru_A0246: Rru_A0246 - Ppx/GppA phosphatase (NCBI), at 305,449 to 306,648 _A0246 Position (kb) 304 305 306Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 304.512 kb on - strandat 304.662 kb on + strandat 304.663 kb on - strandat 304.663 kb on - strandat 305.520 kb on + strandat 305.521 kb on - strandat 305.521 kb on - strandat 305.521 kb on - strandat 305.718 kb on + strand, within Rru_A0246at 305.718 kb on + strand, within Rru_A0246at 305.718 kb on + strand, within Rru_A0246at 305.719 kb on - strand, within Rru_A0246at 305.751 kb on + strand, within Rru_A0246at 305.751 kb on + strand, within Rru_A0246at 306.087 kb on + strand, within Rru_A0246at 306.087 kb on + strand, within Rru_A0246at 306.087 kb on + strand, within Rru_A0246at 306.088 kb on - strand, within Rru_A0246at 306.088 kb on - strand, within Rru_A0246at 306.273 kb on + strand, within Rru_A0246

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 18 uM
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304,512 - +0.1
304,662 + +0.1
304,663 - -1.1
304,663 - -1.5
305,520 + -1.2
305,521 - +0.1
305,521 - -1.6
305,521 - +0.1
305,718 + Rru_A0246 0.22 +0.1
305,718 + Rru_A0246 0.22 +0.1
305,718 + Rru_A0246 0.22 +0.1
305,719 - Rru_A0246 0.23 -4.0
305,751 + Rru_A0246 0.25 -0.3
305,751 + Rru_A0246 0.25 -2.7
306,087 + Rru_A0246 0.53 +0.1
306,087 + Rru_A0246 0.53 +0.1
306,087 + Rru_A0246 0.53 -1.5
306,088 - Rru_A0246 0.53 +0.1
306,088 - Rru_A0246 0.53 -0.5
306,273 + Rru_A0246 0.69 +0.1

Or see this region's nucleotide sequence