Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0083

Experiment: acetate; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0082 and Rru_A0083 are separated by 183 nucleotidesRru_A0083 and Rru_A0084 are separated by 100 nucleotides Rru_A0082: Rru_A0082 - chemotaxis sensory transducer (NCBI), at 95,041 to 96,120 _A0082 Rru_A0083: Rru_A0083 - nuclease, SNase-like (NCBI), at 96,304 to 97,128 _A0083 Rru_A0084: Rru_A0084 - Peptidase S33, proline iminopeptidase 1 (NCBI), at 97,229 to 98,185 _A0084 Position (kb) 96 97 98Strain fitness (log2 ratio) -3 -2 -1 0 1at 95.347 kb on + strand, within Rru_A0082at 95.347 kb on + strand, within Rru_A0082at 95.348 kb on - strand, within Rru_A0082at 95.393 kb on + strand, within Rru_A0082at 95.394 kb on - strand, within Rru_A0082at 95.394 kb on - strand, within Rru_A0082at 95.450 kb on + strand, within Rru_A0082at 95.451 kb on - strand, within Rru_A0082at 95.451 kb on - strand, within Rru_A0082at 95.451 kb on - strand, within Rru_A0082at 95.589 kb on - strand, within Rru_A0082at 95.595 kb on + strand, within Rru_A0082at 95.596 kb on - strand, within Rru_A0082at 95.597 kb on + strand, within Rru_A0082at 95.597 kb on + strand, within Rru_A0082at 95.597 kb on + strand, within Rru_A0082at 95.597 kb on + strand, within Rru_A0082at 95.597 kb on + strand, within Rru_A0082at 95.597 kb on + strand, within Rru_A0082at 95.597 kb on + strand, within Rru_A0082at 95.598 kb on - strand, within Rru_A0082at 95.598 kb on - strand, within Rru_A0082at 95.598 kb on - strand, within Rru_A0082at 95.662 kb on + strand, within Rru_A0082at 95.663 kb on - strand, within Rru_A0082at 95.663 kb on - strand, within Rru_A0082at 96.229 kb on + strandat 96.230 kb on - strandat 96.245 kb on + strandat 96.245 kb on + strandat 96.245 kb on + strandat 96.246 kb on - strandat 96.246 kb on - strandat 96.555 kb on + strand, within Rru_A0083at 96.555 kb on + strand, within Rru_A0083at 96.555 kb on + strand, within Rru_A0083at 96.556 kb on - strand, within Rru_A0083at 96.556 kb on - strand, within Rru_A0083at 96.595 kb on + strand, within Rru_A0083at 96.596 kb on - strand, within Rru_A0083at 97.115 kb on - strandat 97.127 kb on - strandat 97.142 kb on + strandat 97.143 kb on - strandat 97.143 kb on - strandat 97.145 kb on + strandat 97.145 kb on + strandat 97.145 kb on + strandat 97.145 kb on + strandat 97.145 kb on + strandat 97.145 kb on + strandat 97.146 kb on - strandat 97.146 kb on - strandat 97.146 kb on - strandat 97.146 kb on - strandat 97.146 kb on - strandat 97.152 kb on + strandat 97.152 kb on + strandat 97.152 kb on + strandat 97.152 kb on + strandat 97.153 kb on - strandat 97.153 kb on - strandat 97.153 kb on - strandat 97.153 kb on - strandat 97.153 kb on - strandat 97.154 kb on + strandat 97.155 kb on - strandat 97.155 kb on - strandat 97.409 kb on + strand, within Rru_A0084at 97.410 kb on - strand, within Rru_A0084at 97.410 kb on - strand, within Rru_A0084at 97.438 kb on + strand, within Rru_A0084at 97.438 kb on + strand, within Rru_A0084at 97.439 kb on - strand, within Rru_A0084at 97.439 kb on - strand, within Rru_A0084at 97.492 kb on + strand, within Rru_A0084at 97.495 kb on + strand, within Rru_A0084at 97.495 kb on + strand, within Rru_A0084at 97.495 kb on + strand, within Rru_A0084at 97.495 kb on + strand, within Rru_A0084at 97.496 kb on - strand, within Rru_A0084at 97.496 kb on - strand, within Rru_A0084at 97.496 kb on - strand, within Rru_A0084at 97.775 kb on + strand, within Rru_A0084at 97.778 kb on + strand, within Rru_A0084at 97.778 kb on + strand, within Rru_A0084at 97.841 kb on + strand, within Rru_A0084at 97.841 kb on + strand, within Rru_A0084at 97.842 kb on - strand, within Rru_A0084at 97.931 kb on + strand, within Rru_A0084at 97.931 kb on + strand, within Rru_A0084at 97.931 kb on + strand, within Rru_A0084at 97.931 kb on + strand, within Rru_A0084at 97.932 kb on - strand, within Rru_A0084at 97.932 kb on - strand, within Rru_A0084at 97.932 kb on - strand, within Rru_A0084at 97.932 kb on - strand, within Rru_A0084at 97.932 kb on - strand, within Rru_A0084at 97.932 kb on - strand, within Rru_A0084at 98.113 kb on + strandat 98.114 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 18 uM
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95,347 + Rru_A0082 0.28 -1.5
95,347 + Rru_A0082 0.28 -1.0
95,348 - Rru_A0082 0.28 -0.9
95,393 + Rru_A0082 0.33 +0.1
95,394 - Rru_A0082 0.33 -3.1
95,394 - Rru_A0082 0.33 +0.1
95,450 + Rru_A0082 0.38 -3.5
95,451 - Rru_A0082 0.38 -2.0
95,451 - Rru_A0082 0.38 -1.0
95,451 - Rru_A0082 0.38 -1.1
95,589 - Rru_A0082 0.51 +0.1
95,595 + Rru_A0082 0.51 +0.1
95,596 - Rru_A0082 0.51 +0.1
95,597 + Rru_A0082 0.51 +0.8
95,597 + Rru_A0082 0.51 +0.3
95,597 + Rru_A0082 0.51 -1.0
95,597 + Rru_A0082 0.51 -1.1
95,597 + Rru_A0082 0.51 +0.1
95,597 + Rru_A0082 0.51 -1.2
95,597 + Rru_A0082 0.51 +0.1
95,598 - Rru_A0082 0.52 -0.9
95,598 - Rru_A0082 0.52 -1.0
95,598 - Rru_A0082 0.52 -0.6
95,662 + Rru_A0082 0.57 +0.1
95,663 - Rru_A0082 0.58 +0.4
95,663 - Rru_A0082 0.58 +0.1
96,229 + -1.3
96,230 - -1.9
96,245 + +0.1
96,245 + -1.7
96,245 + -1.3
96,246 - +0.1
96,246 - -0.7
96,555 + Rru_A0083 0.30 +0.1
96,555 + Rru_A0083 0.30 -2.0
96,555 + Rru_A0083 0.30 -0.7
96,556 - Rru_A0083 0.31 -2.3
96,556 - Rru_A0083 0.31 -1.2
96,595 + Rru_A0083 0.35 -0.9
96,596 - Rru_A0083 0.35 -1.8
97,115 - -0.2
97,127 - +0.1
97,142 + +0.1
97,143 - +0.2
97,143 - +0.1
97,145 + -0.6
97,145 + -1.7
97,145 + +0.1
97,145 + -1.2
97,145 + -0.5
97,145 + -0.9
97,146 - +0.1
97,146 - +0.1
97,146 - -1.3
97,146 - -2.1
97,146 - -2.2
97,152 + -0.3
97,152 + -2.3
97,152 + +0.1
97,152 + -1.5
97,153 - -1.7
97,153 - +0.1
97,153 - -1.1
97,153 - +0.1
97,153 - -1.1
97,154 + -0.7
97,155 - +0.1
97,155 - -0.2
97,409 + Rru_A0084 0.19 +0.1
97,410 - Rru_A0084 0.19 +0.7
97,410 - Rru_A0084 0.19 +0.1
97,438 + Rru_A0084 0.22 -0.9
97,438 + Rru_A0084 0.22 -1.1
97,439 - Rru_A0084 0.22 -1.5
97,439 - Rru_A0084 0.22 -0.2
97,492 + Rru_A0084 0.27 +0.1
97,495 + Rru_A0084 0.28 +0.1
97,495 + Rru_A0084 0.28 -0.6
97,495 + Rru_A0084 0.28 -0.5
97,495 + Rru_A0084 0.28 +0.1
97,496 - Rru_A0084 0.28 +0.1
97,496 - Rru_A0084 0.28 -0.1
97,496 - Rru_A0084 0.28 -1.8
97,775 + Rru_A0084 0.57 -1.9
97,778 + Rru_A0084 0.57 -1.1
97,778 + Rru_A0084 0.57 -1.7
97,841 + Rru_A0084 0.64 -1.7
97,841 + Rru_A0084 0.64 -1.7
97,842 - Rru_A0084 0.64 +0.1
97,931 + Rru_A0084 0.73 -1.0
97,931 + Rru_A0084 0.73 -1.4
97,931 + Rru_A0084 0.73 +0.1
97,931 + Rru_A0084 0.73 -1.5
97,932 - Rru_A0084 0.73 +0.1
97,932 - Rru_A0084 0.73 +0.1
97,932 - Rru_A0084 0.73 -2.7
97,932 - Rru_A0084 0.73 +0.1
97,932 - Rru_A0084 0.73 -1.5
97,932 - Rru_A0084 0.73 -1.6
98,113 + +0.1
98,114 - -1.2

Or see this region's nucleotide sequence