Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS28115

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs
6,260,478	+				-0.4
6,260,479	-				-3.4
6,260,479	-				-0.1
6,260,491	+				+1.7
6,260,492	-				-0.1
6,260,530	+				-0.6
6,260,603	+				+0.5
6,260,604	-				-3.4
6,260,634	+				+1.6
6,260,634	+				-0.9
6,260,634	+				-0.1
6,260,634	+				+0.3
6,260,635	-				-0.9
6,260,635	-				-2.0
6,260,635	-				-0.8
6,260,635	-				+0.7
6,260,635	-				-1.8
6,260,635	-				+0.9
6,260,635	-				-0.7
6,260,635	-				-0.6
6,260,635	-				+0.3
6,260,635	-				-0.5
6,260,643	-				+0.8
6,260,945	+		PFLU_RS28110	0.69	-1.8
6,260,945	+		PFLU_RS28110	0.69	-0.6
6,260,945	+		PFLU_RS28110	0.69	-3.5
6,260,945	+		PFLU_RS28110	0.69	-0.8
6,260,945	+		PFLU_RS28110	0.69	-1.4
6,260,945	+		PFLU_RS28110	0.69	-1.1
6,260,945	+		PFLU_RS28110	0.69	-1.4
6,260,945	+		PFLU_RS28110	0.69	-0.9
6,260,946	-		PFLU_RS28110	0.69	-0.4
6,260,946	-		PFLU_RS28110	0.69	+1.7
6,260,946	-		PFLU_RS28110	0.69	-1.8
6,260,946	-		PFLU_RS28110	0.69	-2.3
6,261,051	+				-1.9
6,261,051	+				-0.5
6,261,052	-				+0.1
6,261,052	-				+0.9
6,261,052	-				-0.4
6,261,055	+				-0.8
6,261,055	+				-0.2
6,261,055	+				-2.8
6,261,055	+				-0.4
6,261,055	+				-0.8
6,261,056	-				-0.4
6,261,056	-				+0.6
6,261,068	+				+0.0
6,261,068	+				+1.1
6,261,116	+				+0.3
6,261,116	+				-3.6
6,261,116	+				+0.3
6,261,116	+				-0.9
6,261,116	+				+0.2
6,261,117	-				+0.3
6,261,117	-				-0.2
6,261,117	-				+0.5
6,261,159	+				-0.3
6,261,159	+				+1.2
6,261,159	+				+0.2
6,261,159	+				+1.0
6,261,159	+				+0.4
6,261,159	+				+0.7
6,261,159	+				+1.3
6,261,159	+				+0.1
6,261,160	-				-0.8
6,261,160	-				-0.5
6,261,160	-				-1.2
6,261,160	-				-0.8
6,261,160	-				-0.2
6,261,160	-				-1.2
6,261,174	+				+1.8
6,261,174	+				+0.4
6,261,174	+				-0.8
6,261,175	-				-0.2
6,261,175	-				-0.2
6,261,175	-				+2.1
6,261,186	+				-2.6
6,261,241	+				-0.0
6,261,242	-				-2.2
6,261,258	+				-0.4
6,261,258	+				-1.8
6,261,258	+				+0.1
6,261,258	+				-0.6
6,261,259	-				-1.4
6,261,259	-				+0.9
6,261,259	-				-0.7
6,261,259	-				-0.4
6,261,259	-				+0.4
6,261,278	+				+0.2
6,261,279	-				+0.1
6,261,279	-				-1.2
6,261,279	-				+0.7
6,261,279	-				-1.4
6,261,317	+		PFLU_RS28115	0.10	+0.2
6,261,317	+		PFLU_RS28115	0.10	-0.2
6,261,317	+		PFLU_RS28115	0.10	+0.8
6,261,317	+		PFLU_RS28115	0.10	+0.8
6,261,433	+		PFLU_RS28115	0.17	+1.0
6,261,433	+		PFLU_RS28115	0.17	+1.6
6,261,433	+		PFLU_RS28115	0.17	-1.4
6,261,433	+		PFLU_RS28115	0.17	+0.9
6,261,434	-		PFLU_RS28115	0.17	+1.3
6,261,434	-		PFLU_RS28115	0.17	-0.5
6,261,542	+		PFLU_RS28115	0.24	+0.3
6,261,542	+		PFLU_RS28115	0.24	-1.4
6,261,542	+		PFLU_RS28115	0.24	+1.6
6,261,542	+		PFLU_RS28115	0.24	+0.0
6,261,542	+		PFLU_RS28115	0.24	-0.6
6,261,542	+		PFLU_RS28115	0.24	-4.4
6,261,542	+		PFLU_RS28115	0.24	+1.2
6,261,542	+		PFLU_RS28115	0.24	+1.8
6,261,543	-		PFLU_RS28115	0.24	-2.6
6,261,543	-		PFLU_RS28115	0.24	-0.2
6,261,543	-		PFLU_RS28115	0.24	-0.9
6,261,543	-		PFLU_RS28115	0.24	+0.5
6,261,543	-		PFLU_RS28115	0.24	+1.3
6,261,683	+		PFLU_RS28115	0.32	+1.6
6,261,684	-		PFLU_RS28115	0.32	+0.1
6,261,938	+		PFLU_RS28115	0.47	-2.0
6,261,938	+		PFLU_RS28115	0.47	+0.3
6,261,938	+		PFLU_RS28115	0.47	+1.2
6,261,938	+		PFLU_RS28115	0.47	-1.7
6,261,938	+		PFLU_RS28115	0.47	+0.3
6,261,939	-		PFLU_RS28115	0.47	+0.8
6,261,945	-		PFLU_RS28115	0.48	+0.1
6,262,027	+		PFLU_RS28115	0.53	-1.8
6,262,027	+		PFLU_RS28115	0.53	+0.2
6,262,028	-		PFLU_RS28115	0.53	-2.2
6,262,437	+		PFLU_RS28115	0.77	-0.1
6,262,437	+		PFLU_RS28115	0.77	-1.9
6,262,437	+		PFLU_RS28115	0.77	+0.2
6,262,437	+		PFLU_RS28115	0.77	-1.2
6,262,437	+		PFLU_RS28115	0.77	-0.1
6,262,437	+		PFLU_RS28115	0.77	+1.1
6,262,437	+		PFLU_RS28115	0.77	+0.3
6,262,437	+		PFLU_RS28115	0.77	-0.7
6,262,437	+		PFLU_RS28115	0.77	+0.8
6,262,438	-		PFLU_RS28115	0.77	-0.6
6,262,438	-		PFLU_RS28115	0.77	+0.5
6,262,438	-		PFLU_RS28115	0.77	-0.6
6,262,438	-		PFLU_RS28115	0.77	-2.4
6,262,438	-		PFLU_RS28115	0.77	-0.2
6,262,438	-		PFLU_RS28115	0.77	+1.5
6,262,438	-		PFLU_RS28115	0.77	-1.2
6,262,438	-		PFLU_RS28115	0.77	-1.8
6,262,458	+		PFLU_RS28115	0.79	+0.0
6,262,458	+		PFLU_RS28115	0.79	-0.8
6,262,458	+		PFLU_RS28115	0.79	+2.2
6,262,459	-		PFLU_RS28115	0.79	+0.2
6,262,459	-		PFLU_RS28115	0.79	-0.1
6,262,459	-		PFLU_RS28115	0.79	+0.7
6,262,459	-		PFLU_RS28115	0.79	-0.1
6,262,459	-		PFLU_RS28115	0.79	+1.6
6,262,459	-		PFLU_RS28115	0.79	+0.8
6,262,459	-		PFLU_RS28115	0.79	-1.1
6,262,459	-		PFLU_RS28115	0.79	-0.9
6,262,476	+		PFLU_RS28115	0.80	-0.5
6,262,477	-		PFLU_RS28115	0.80	+0.3
6,262,477	-		PFLU_RS28115	0.80	-1.2
6,262,477	-		PFLU_RS28115	0.80	+0.1
6,262,501	-		PFLU_RS28115	0.81	+1.3
6,262,525	+		PFLU_RS28115	0.83	-3.2
6,262,526	-		PFLU_RS28115	0.83	-0.8
6,262,626	+		PFLU_RS28115	0.89	-3.0
6,262,627	-		PFLU_RS28115	0.89	-0.8
6,262,642	+		PFLU_RS28115	0.90	-0.5
6,262,642	+		PFLU_RS28115	0.90	+1.7
6,262,642	+		PFLU_RS28115	0.90	-2.4
6,262,642	+		PFLU_RS28115	0.90	-0.1
6,262,642	+		PFLU_RS28115	0.90	+0.9
6,262,642	+		PFLU_RS28115	0.90	+1.6
6,262,642	+		PFLU_RS28115	0.90	-0.6
6,262,642	+		PFLU_RS28115	0.90	-0.8
6,262,642	+		PFLU_RS28115	0.90	+1.6
6,262,642	+		PFLU_RS28115	0.90	+1.4
6,262,642	+		PFLU_RS28115	0.90	-0.3
6,262,642	+		PFLU_RS28115	0.90	-1.2
6,262,642	+		PFLU_RS28115	0.90	-1.6
6,262,642	+		PFLU_RS28115	0.90	-1.4
6,262,642	+		PFLU_RS28115	0.90	+1.0
6,262,642	+		PFLU_RS28115	0.90	-0.1
6,262,642	+		PFLU_RS28115	0.90	-0.8
6,262,642	+		PFLU_RS28115	0.90	-0.3
6,262,642	+		PFLU_RS28115	0.90	+1.8
6,262,642	+		PFLU_RS28115	0.90	-0.4
6,262,643	-		PFLU_RS28115	0.90	+0.6
6,262,643	-		PFLU_RS28115	0.90	-3.2
6,262,643	-		PFLU_RS28115	0.90	-0.7
6,262,643	-		PFLU_RS28115	0.90	+1.4
6,262,643	-		PFLU_RS28115	0.90	-1.0
6,262,643	-		PFLU_RS28115	0.90	+0.3
6,262,643	-		PFLU_RS28115	0.90	-0.2
6,262,643	-		PFLU_RS28115	0.90	+1.2
6,262,643	-		PFLU_RS28115	0.90	-0.1
6,262,643	-		PFLU_RS28115	0.90	+0.0
6,262,643	-		PFLU_RS28115	0.90	-0.6
6,262,643	-		PFLU_RS28115	0.90	-2.7
6,262,643	-		PFLU_RS28115	0.90	-0.5
6,262,645	+		PFLU_RS28115	0.90	+0.7
6,262,646	-		PFLU_RS28115	0.90	-0.5
6,262,764	+				-0.9
6,262,764	+				+0.2
6,262,764	+				+0.5
6,262,764	+				+1.4
6,262,764	+				-0.1
6,262,764	+				-0.7
6,262,764	+				+0.8
6,262,764	+				+0.7
6,262,764	+				-0.0
6,262,765	-				+0.3
6,262,765	-				-0.3
6,262,765	-				-0.0
6,262,765	-				+1.2
6,262,765	-				+0.3
6,262,785	+				-0.2
6,262,786	-				-1.6
6,263,188	+		PFLU_RS28120	0.84	+0.6
6,263,188	+		PFLU_RS28120	0.84	-1.6
6,263,188	+		PFLU_RS28120	0.84	-0.5
6,263,189	-		PFLU_RS28120	0.84	+0.3
6,263,189	-		PFLU_RS28120	0.84	+2.2
6,263,189	-		PFLU_RS28120	0.84	-0.4
6,263,189	-		PFLU_RS28120	0.84	+1.9
6,263,189	-		PFLU_RS28120	0.84	+0.7
6,263,189	-		PFLU_RS28120	0.84	+0.3
6,263,189	-		PFLU_RS28120	0.84	-2.8
6,263,249	+				-0.7
6,263,250	-				+0.7
6,263,250	-				+0.9
6,263,250	-				-1.1
6,263,250	-				-0.8
6,263,250	-				-0.5
6,263,278	+				-0.9
6,263,279	-				+2.8
6,263,279	-				-0.5
6,263,340	+		PFLU_RS28125	0.18	+0.6
6,263,340	+		PFLU_RS28125	0.18	+2.1
6,263,340	+		PFLU_RS28125	0.18	-0.8
6,263,340	+		PFLU_RS28125	0.18	-0.9
6,263,340	+		PFLU_RS28125	0.18	-0.0
6,263,340	+		PFLU_RS28125	0.18	+0.0
6,263,340	+		PFLU_RS28125	0.18	+0.7
6,263,340	+		PFLU_RS28125	0.18	+1.0
6,263,340	+		PFLU_RS28125	0.18	-0.3
6,263,340	+		PFLU_RS28125	0.18	+0.1
6,263,340	+		PFLU_RS28125	0.18	+0.7
6,263,340	+		PFLU_RS28125	0.18	-2.1
6,263,340	+		PFLU_RS28125	0.18	+0.5
6,263,341	-		PFLU_RS28125	0.18	-2.5
6,263,341	-		PFLU_RS28125	0.18	-0.4
6,263,341	-		PFLU_RS28125	0.18	+0.6
6,263,341	-		PFLU_RS28125	0.18	-0.7
6,263,341	-		PFLU_RS28125	0.18	-0.1
6,263,341	-		PFLU_RS28125	0.18	+1.3
6,263,341	-		PFLU_RS28125	0.18	-0.3
6,263,341	-		PFLU_RS28125	0.18	+0.5
6,263,341	-		PFLU_RS28125	0.18	+0.1
6,263,341	-		PFLU_RS28125	0.18	+0.3
6,263,341	-		PFLU_RS28125	0.18	-0.1
6,263,341	-		PFLU_RS28125	0.18	-0.2
6,263,341	-		PFLU_RS28125	0.18	-0.1
6,263,341	-		PFLU_RS28125	0.18	-0.4
6,263,590	+		PFLU_RS28125	0.74	+1.3
6,263,590	+		PFLU_RS28125	0.74	-0.5
6,263,590	+		PFLU_RS28125	0.74	-1.1
6,263,590	+		PFLU_RS28125	0.74	-0.1
6,263,590	+		PFLU_RS28125	0.74	+0.8
6,263,590	+		PFLU_RS28125	0.74	+1.1
6,263,590	+		PFLU_RS28125	0.74	-1.8
6,263,591	-		PFLU_RS28125	0.74	-0.4
6,263,591	-		PFLU_RS28125	0.74	-0.2
6,263,591	-		PFLU_RS28125	0.74	+0.3
6,263,681	+				+0.9
6,263,681	+				-0.8
6,263,681	+				+2.2
6,263,681	+				+1.8
6,263,681	+				+1.4
6,263,681	+				-1.9
6,263,681	+				-0.0
6,263,682	-				-2.0
6,263,682	-				-0.8
6,263,682	-				+1.1
6,263,682	-				-0.1
6,263,682	-				-0.0
6,263,682	-				+0.3
6,263,682	-				-0.2
6,263,698	+				-0.9
6,263,698	+				+0.9
6,263,741	+				-2.8
6,263,769	-				+0.8
6,263,774	+				-0.4
6,263,775	-				-0.0
6,263,775	-				-0.2
6,263,775	-				+1.4
6,263,777	+				-1.2
6,263,777	+				+0.8
6,263,778	-				-1.2
6,263,778	-				-1.5
6,263,778	-				+0.7
6,263,780	+				-0.6
6,263,781	-				-1.6
6,263,781	-				-0.9
6,263,781	-				-0.7
6,263,781	-				+1.6
6,263,783	+				+1.7
6,263,783	+				-0.0
6,263,806	+				-0.5