Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS04825

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs
1,079,797	+		PFLU_RS04820	0.57	+0.1
1,079,797	+		PFLU_RS04820	0.57	-0.4
1,079,798	-		PFLU_RS04820	0.57	+0.8
1,079,798	-		PFLU_RS04820	0.57	-1.1
1,079,798	-		PFLU_RS04820	0.57	+1.8
1,080,049	+		PFLU_RS04820	0.68	-1.5
1,080,050	-		PFLU_RS04820	0.68	+1.1
1,080,050	-		PFLU_RS04820	0.68	-1.9
1,080,118	+		PFLU_RS04820	0.71	-0.5
1,080,118	+		PFLU_RS04820	0.71	+1.3
1,080,118	+		PFLU_RS04820	0.71	+0.1
1,080,119	-		PFLU_RS04820	0.71	-1.6
1,080,119	-		PFLU_RS04820	0.71	+0.1
1,080,119	-		PFLU_RS04820	0.71	-0.7
1,080,127	+		PFLU_RS04820	0.72	-0.0
1,080,127	+		PFLU_RS04820	0.72	-1.3
1,080,128	-		PFLU_RS04820	0.72	-2.3
1,080,128	-		PFLU_RS04820	0.72	-1.9
1,080,128	-		PFLU_RS04820	0.72	+0.2
1,080,128	-		PFLU_RS04820	0.72	+0.7
1,080,128	-		PFLU_RS04820	0.72	+0.6
1,080,128	-		PFLU_RS04820	0.72	-0.4
1,080,145	+		PFLU_RS04820	0.73	+0.8
1,080,145	+		PFLU_RS04820	0.73	+0.0
1,080,146	-		PFLU_RS04820	0.73	-2.6
1,080,146	-		PFLU_RS04820	0.73	+2.2
1,080,146	-		PFLU_RS04820	0.73	+0.4
1,080,146	-		PFLU_RS04820	0.73	-0.3
1,080,146	-		PFLU_RS04820	0.73	-1.9
1,080,146	-		PFLU_RS04820	0.73	+0.9
1,080,262	+		PFLU_RS04820	0.78	-1.2
1,080,262	+		PFLU_RS04820	0.78	+0.3
1,080,262	+		PFLU_RS04820	0.78	+0.1
1,080,262	+		PFLU_RS04820	0.78	-1.7
1,080,263	-		PFLU_RS04820	0.78	-1.2
1,080,263	-		PFLU_RS04820	0.78	+2.1
1,080,365	+		PFLU_RS04820	0.83	-0.5
1,080,365	+		PFLU_RS04820	0.83	-0.4
1,080,527	+				-1.2
1,080,661	+				-0.4
1,080,662	-				+0.9
1,080,662	-				-0.1
1,080,662	-				+0.1
1,080,662	-				+0.8
1,080,761	+		PFLU_RS04825	0.15	-1.2
1,080,761	+		PFLU_RS04825	0.15	-0.3
1,080,761	+		PFLU_RS04825	0.15	-2.6
1,080,761	+		PFLU_RS04825	0.15	-0.7
1,080,761	+		PFLU_RS04825	0.15	-0.1
1,080,762	-		PFLU_RS04825	0.15	+0.5
1,080,762	-		PFLU_RS04825	0.15	-1.0
1,080,762	-		PFLU_RS04825	0.15	+1.0
1,080,762	-		PFLU_RS04825	0.15	-0.7
1,080,762	-		PFLU_RS04825	0.15	-1.7
1,080,762	-		PFLU_RS04825	0.15	+2.3
1,080,924	-				+2.2
1,080,974	-				+0.2
1,080,980	-				-0.9
1,080,980	-				-1.7
1,081,023	+				-0.7
1,081,023	+				+1.0
1,081,023	+				-2.4
1,081,023	+				-0.0
1,081,023	+				+1.3
1,081,023	+				+0.5
1,081,023	+				-1.9
1,081,023	+				-1.2
1,081,023	+				+1.0
1,081,023	+				+1.4
1,081,023	+				-1.1
1,081,023	+				+3.0
1,081,023	+				+0.0
1,081,023	+				-0.2
1,081,023	+				+0.2
1,081,023	+				-0.2
1,081,023	+				-0.3
1,081,023	+				-0.4
1,081,023	+				+0.4
1,081,023	+				-0.9
1,081,024	-				-2.9
1,081,024	-				-1.0
1,081,024	-				+0.0
1,081,024	-				-0.9
1,081,024	-				+1.8
1,081,024	-				-0.8
1,081,024	-				-1.3
1,081,024	-				-1.7
1,081,024	-				-1.0
1,081,024	-				-0.5
1,081,078	+		PFLU_RS04830	0.16	-0.6
1,081,079	-		PFLU_RS04830	0.16	-0.3
1,081,079	-		PFLU_RS04830	0.16	-1.5
1,081,313	+		PFLU_RS04830	0.43	+0.8
1,081,314	-		PFLU_RS04830	0.43	-2.1
1,081,314	-		PFLU_RS04830	0.43	-1.8
1,081,316	+		PFLU_RS04830	0.43	+0.7
1,081,316	+		PFLU_RS04830	0.43	-1.0
1,081,317	-		PFLU_RS04830	0.43	+0.6
1,081,317	-		PFLU_RS04830	0.43	-0.3
1,081,317	-		PFLU_RS04830	0.43	-1.8
1,081,317	-		PFLU_RS04830	0.43	-0.7
1,081,341	+		PFLU_RS04830	0.46	-1.0
1,081,419	+		PFLU_RS04830	0.55	+0.8
1,081,419	+		PFLU_RS04830	0.55	-2.4
1,081,419	+		PFLU_RS04830	0.55	+0.3
1,081,419	+		PFLU_RS04830	0.55	+0.8
1,081,419	+		PFLU_RS04830	0.55	-1.2
1,081,419	+		PFLU_RS04830	0.55	-1.7
1,081,419	+		PFLU_RS04830	0.55	-2.8
1,081,419	+		PFLU_RS04830	0.55	-1.1
1,081,419	+		PFLU_RS04830	0.55	-2.8
1,081,419	+		PFLU_RS04830	0.55	-1.1
1,081,419	+		PFLU_RS04830	0.55	-2.9
1,081,419	+		PFLU_RS04830	0.55	+0.3
1,081,419	+		PFLU_RS04830	0.55	-2.4
1,081,419	+		PFLU_RS04830	0.55	-1.3
1,081,419	+		PFLU_RS04830	0.55	-2.8
1,081,419	+		PFLU_RS04830	0.55	-0.2
1,081,419	+		PFLU_RS04830	0.55	-0.3
1,081,419	+		PFLU_RS04830	0.55	-0.7
1,081,420	-		PFLU_RS04830	0.55	+1.3
1,081,420	-		PFLU_RS04830	0.55	-1.3
1,081,420	-		PFLU_RS04830	0.55	-1.8
1,081,420	-		PFLU_RS04830	0.55	+0.2
1,081,420	-		PFLU_RS04830	0.55	+0.3
1,081,420	-		PFLU_RS04830	0.55	-0.9
1,081,420	-		PFLU_RS04830	0.55	+1.2
1,081,420	-		PFLU_RS04830	0.55	-0.6
1,081,420	-		PFLU_RS04830	0.55	+0.7
1,081,420	-		PFLU_RS04830	0.55	+1.1
1,081,420	-		PFLU_RS04830	0.55	+0.3
1,081,420	-		PFLU_RS04830	0.55	+1.1
1,081,420	-		PFLU_RS04830	0.55	-0.8
1,081,420	-		PFLU_RS04830	0.55	-0.8
1,081,420	-		PFLU_RS04830	0.55	-1.1
1,081,420	-		PFLU_RS04830	0.55	+0.8
1,081,453	-		PFLU_RS04830	0.59	+0.4
1,081,453	-		PFLU_RS04830	0.59	-0.3
1,081,453	-		PFLU_RS04830	0.59	-0.7
1,081,453	-		PFLU_RS04830	0.59	-0.6
1,081,460	+		PFLU_RS04830	0.60	+0.1
1,081,461	-		PFLU_RS04830	0.60	-0.7
1,081,461	-		PFLU_RS04830	0.60	+1.4
1,081,510	-		PFLU_RS04830	0.66	-2.1
1,081,510	-		PFLU_RS04830	0.66	-0.4
1,081,566	-		PFLU_RS04830	0.72	-1.7
1,081,566	-		PFLU_RS04830	0.72	-0.1
1,081,603	+		PFLU_RS04830	0.77	-1.2
1,081,603	+		PFLU_RS04830	0.77	-0.2
1,081,603	+		PFLU_RS04830	0.77	-0.6
1,081,604	-		PFLU_RS04830	0.77	-0.4
1,081,604	-		PFLU_RS04830	0.77	+0.1
1,081,604	-		PFLU_RS04830	0.77	+0.4
1,081,604	-		PFLU_RS04830	0.77	-0.7
1,081,604	-		PFLU_RS04830	0.77	-1.0
1,081,604	-		PFLU_RS04830	0.77	-0.0
1,081,604	-		PFLU_RS04830	0.77	+1.5
1,081,626	+		PFLU_RS04830	0.79	+0.9
1,081,626	+		PFLU_RS04830	0.79	+0.2
1,081,626	+		PFLU_RS04830	0.79	-0.9
1,081,626	+		PFLU_RS04830	0.79	+0.0
1,081,626	+		PFLU_RS04830	0.79	+0.2
1,081,627	-		PFLU_RS04830	0.79	+1.0
1,081,627	-		PFLU_RS04830	0.79	-1.9
1,081,627	-		PFLU_RS04830	0.79	-0.9
1,081,627	-		PFLU_RS04830	0.79	+0.3
1,081,627	-		PFLU_RS04830	0.79	+0.4
1,081,627	-		PFLU_RS04830	0.79	-0.4
1,081,766	+				-0.9
1,081,766	+				-0.1
1,081,821	+				+0.1
1,081,821	+				-1.3
1,081,865	+				-1.8
1,081,865	+				-0.1
1,081,865	+				-0.7
1,081,866	-				-2.3
1,081,866	-				-0.3
1,081,873	+				-1.4
1,081,874	-				-0.6