Experiment: Urea (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00390 and BWI76_RS00395 overlap by 49 nucleotides BWI76_RS00395 and BWI76_RS00400 are separated by 57 nucleotides BWI76_RS00400 and BWI76_RS00405 are separated by 215 nucleotides BWI76_RS00405 and BWI76_RS00410 overlap by 48 nucleotides
BWI76_RS00390: BWI76_RS00390 - two-component system sensor histidine kinase NtrB, at 82,296 to 83,345
_RS00390
BWI76_RS00395: BWI76_RS00395 - hypothetical protein, at 83,297 to 83,476
_RS00395
BWI76_RS00400: BWI76_RS00400 - glutamine synthetase, at 83,534 to 84,943
_RS00400
BWI76_RS00405: BWI76_RS00405 - hypothetical protein, at 85,159 to 85,369
_RS00405
BWI76_RS00410: BWI76_RS00410 - translational GTPase TypA, at 85,322 to 87,145
_RS00410
Position (kb) 83
84
85 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 82.861 kb on + strand, within BWI76_RS00390 at 82.889 kb on + strand, within BWI76_RS00390 at 83.033 kb on + strand, within BWI76_RS00390 at 83.040 kb on + strand, within BWI76_RS00390 at 83.142 kb on + strand, within BWI76_RS00390 at 83.186 kb on - strand, within BWI76_RS00390 at 83.302 kb on + strand at 83.501 kb on - strand at 83.508 kb on - strand at 83.541 kb on + strand at 83.636 kb on + strand at 83.695 kb on + strand, within BWI76_RS00400 at 83.819 kb on - strand, within BWI76_RS00400 at 84.616 kb on + strand, within BWI76_RS00400 at 84.953 kb on + strand at 84.961 kb on - strand at 85.041 kb on - strand at 85.289 kb on - strand, within BWI76_RS00405
Per-strain Table
Position Strand Gene LocusTag Fraction Urea (N) remove 82,861 + BWI76_RS00390 0.54 -2.3 82,889 + BWI76_RS00390 0.56 -4.3 83,033 + BWI76_RS00390 0.70 -1.5 83,040 + BWI76_RS00390 0.71 -2.8 83,142 + BWI76_RS00390 0.81 -3.5 83,186 - BWI76_RS00390 0.85 -4.4 83,302 + -3.1 83,501 - -0.5 83,508 - -3.1 83,541 + -1.6 83,636 + -1.7 83,695 + BWI76_RS00400 0.11 -0.7 83,819 - BWI76_RS00400 0.20 -1.9 84,616 + BWI76_RS00400 0.77 -2.9 84,953 + -2.9 84,961 - -3.2 85,041 - -3.0 85,289 - BWI76_RS00405 0.62 +1.5
Or see this region's nucleotide sequence