Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_20665 and AO356_20670 are separated by 21 nucleotides AO356_20670 and AO356_20675 are separated by 95 nucleotides AO356_20675 and AO356_20680 are separated by 261 nucleotides AO356_20680 and AO356_20685 overlap by 4 nucleotides
AO356_20665: AO356_20665 - fumarylacetoacetate hydrolase, at 4,611,364 to 4,612,062
_20665
AO356_20670: AO356_20670 - 3-oxoacyl-ACP reductase, at 4,612,084 to 4,612,842
_20670
AO356_20675: AO356_20675 - dihydrofolate reductase, at 4,612,938 to 4,613,894
_20675
AO356_20680: AO356_20680 - toxin-antitoxin toxin family protein, at 4,614,156 to 4,614,488
_20680
AO356_20685: AO356_20685 - XRE family transcriptional regulator, at 4,614,485 to 4,615,123
_20685
Position (kb)
4612
4613
4614 Strain fitness (log2 ratio)
-1
0
1
2 at 4612.322 kb on - strand, within AO356_20670 at 4612.552 kb on + strand, within AO356_20670 at 4612.553 kb on - strand, within AO356_20670 at 4612.553 kb on - strand, within AO356_20670 at 4612.553 kb on - strand, within AO356_20670 at 4612.563 kb on + strand, within AO356_20670 at 4612.615 kb on + strand, within AO356_20670 at 4612.615 kb on + strand, within AO356_20670 at 4612.615 kb on + strand, within AO356_20670 at 4612.616 kb on - strand, within AO356_20670 at 4612.759 kb on + strand, within AO356_20670 at 4612.760 kb on - strand, within AO356_20670 at 4612.896 kb on + strand at 4612.935 kb on + strand at 4612.935 kb on + strand at 4612.935 kb on + strand at 4612.935 kb on + strand at 4612.935 kb on + strand at 4612.935 kb on + strand at 4612.935 kb on + strand at 4612.936 kb on - strand at 4612.936 kb on - strand at 4612.936 kb on - strand at 4613.022 kb on + strand at 4613.049 kb on + strand, within AO356_20675 at 4613.049 kb on + strand, within AO356_20675 at 4613.049 kb on + strand, within AO356_20675 at 4613.050 kb on - strand, within AO356_20675 at 4613.050 kb on - strand, within AO356_20675 at 4613.050 kb on - strand, within AO356_20675 at 4613.050 kb on - strand, within AO356_20675 at 4613.050 kb on - strand, within AO356_20675 at 4613.050 kb on - strand, within AO356_20675 at 4613.053 kb on + strand, within AO356_20675 at 4613.054 kb on - strand, within AO356_20675 at 4613.054 kb on - strand, within AO356_20675 at 4613.054 kb on - strand, within AO356_20675 at 4613.269 kb on + strand, within AO356_20675 at 4613.294 kb on - strand, within AO356_20675 at 4613.311 kb on - strand, within AO356_20675 at 4613.466 kb on + strand, within AO356_20675 at 4613.466 kb on + strand, within AO356_20675 at 4613.466 kb on + strand, within AO356_20675 at 4613.466 kb on + strand, within AO356_20675 at 4613.466 kb on + strand, within AO356_20675 at 4613.467 kb on - strand, within AO356_20675 at 4613.467 kb on - strand, within AO356_20675 at 4613.467 kb on - strand, within AO356_20675 at 4613.967 kb on + strand at 4613.968 kb on - strand at 4613.968 kb on - strand at 4613.968 kb on - strand at 4614.021 kb on - strand at 4614.021 kb on - strand at 4614.021 kb on - strand at 4614.063 kb on + strand at 4614.064 kb on - strand at 4614.075 kb on + strand at 4614.075 kb on + strand at 4614.075 kb on + strand at 4614.076 kb on - strand at 4614.076 kb on - strand at 4614.111 kb on - strand at 4614.155 kb on + strand at 4614.156 kb on - strand at 4614.156 kb on - strand at 4614.161 kb on + strand at 4614.162 kb on - strand at 4614.162 kb on - strand at 4614.163 kb on + strand at 4614.163 kb on + strand at 4614.163 kb on + strand at 4614.163 kb on + strand at 4614.163 kb on + strand at 4614.163 kb on + strand at 4614.164 kb on - strand at 4614.164 kb on - strand at 4614.164 kb on - strand at 4614.164 kb on - strand at 4614.164 kb on - strand at 4614.352 kb on + strand, within AO356_20680 at 4614.363 kb on - strand, within AO356_20680 at 4614.363 kb on - strand, within AO356_20680 at 4614.390 kb on + strand, within AO356_20680 at 4614.390 kb on + strand, within AO356_20680 at 4614.390 kb on + strand, within AO356_20680 at 4614.391 kb on - strand, within AO356_20680 at 4614.391 kb on - strand, within AO356_20680 at 4614.391 kb on - strand, within AO356_20680 at 4614.408 kb on + strand, within AO356_20680 at 4614.409 kb on - strand, within AO356_20680 at 4614.409 kb on - strand, within AO356_20680 at 4614.423 kb on + strand, within AO356_20680 at 4614.423 kb on + strand, within AO356_20680 at 4614.423 kb on + strand, within AO356_20680 at 4614.423 kb on + strand, within AO356_20680 at 4614.423 kb on + strand, within AO356_20680 at 4614.424 kb on - strand, within AO356_20680 at 4614.424 kb on - strand, within AO356_20680 at 4614.424 kb on - strand, within AO356_20680 at 4614.424 kb on - strand, within AO356_20680 at 4614.438 kb on + strand, within AO356_20680 at 4614.438 kb on + strand, within AO356_20680 at 4614.439 kb on - strand, within AO356_20680 at 4614.459 kb on + strand at 4614.459 kb on + strand at 4614.460 kb on - strand at 4614.478 kb on + strand at 4614.549 kb on + strand, within AO356_20685 at 4614.550 kb on - strand, within AO356_20685 at 4614.550 kb on - strand, within AO356_20685 at 4614.702 kb on - strand, within AO356_20685 at 4614.825 kb on + strand, within AO356_20685 at 4614.832 kb on + strand, within AO356_20685 at 4614.832 kb on + strand, within AO356_20685 at 4614.891 kb on - strand, within AO356_20685
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 4,612,322 - AO356_20670 0.31 -0.2 4,612,552 + AO356_20670 0.62 -0.2 4,612,553 - AO356_20670 0.62 -0.6 4,612,553 - AO356_20670 0.62 +0.9 4,612,553 - AO356_20670 0.62 +0.6 4,612,563 + AO356_20670 0.63 +0.2 4,612,615 + AO356_20670 0.70 +0.1 4,612,615 + AO356_20670 0.70 -1.1 4,612,615 + AO356_20670 0.70 +0.3 4,612,616 - AO356_20670 0.70 -0.4 4,612,759 + AO356_20670 0.89 -1.5 4,612,760 - AO356_20670 0.89 +0.8 4,612,896 + +0.8 4,612,935 + -0.1 4,612,935 + -0.3 4,612,935 + +1.0 4,612,935 + +0.1 4,612,935 + +0.1 4,612,935 + -0.2 4,612,935 + -0.2 4,612,936 - +0.0 4,612,936 - -1.1 4,612,936 - +0.5 4,613,022 + -0.2 4,613,049 + AO356_20675 0.12 +0.5 4,613,049 + AO356_20675 0.12 +0.3 4,613,049 + AO356_20675 0.12 -0.1 4,613,050 - AO356_20675 0.12 -0.7 4,613,050 - AO356_20675 0.12 +0.5 4,613,050 - AO356_20675 0.12 -0.0 4,613,050 - AO356_20675 0.12 +0.4 4,613,050 - AO356_20675 0.12 +0.6 4,613,050 - AO356_20675 0.12 +0.4 4,613,053 + AO356_20675 0.12 +0.2 4,613,054 - AO356_20675 0.12 -0.1 4,613,054 - AO356_20675 0.12 +0.8 4,613,054 - AO356_20675 0.12 +0.2 4,613,269 + AO356_20675 0.35 -0.1 4,613,294 - AO356_20675 0.37 +0.3 4,613,311 - AO356_20675 0.39 -0.1 4,613,466 + AO356_20675 0.55 -0.8 4,613,466 + AO356_20675 0.55 +0.4 4,613,466 + AO356_20675 0.55 +0.8 4,613,466 + AO356_20675 0.55 +0.0 4,613,466 + AO356_20675 0.55 -0.2 4,613,467 - AO356_20675 0.55 -0.1 4,613,467 - AO356_20675 0.55 +0.5 4,613,467 - AO356_20675 0.55 +0.2 4,613,967 + +0.5 4,613,968 - +1.2 4,613,968 - +0.1 4,613,968 - +0.4 4,614,021 - +0.0 4,614,021 - +0.5 4,614,021 - +0.7 4,614,063 + +0.9 4,614,064 - -0.5 4,614,075 + +0.3 4,614,075 + -0.7 4,614,075 + +0.4 4,614,076 - -0.3 4,614,076 - +0.1 4,614,111 - +0.3 4,614,155 + -0.0 4,614,156 - -0.1 4,614,156 - -0.3 4,614,161 + +0.3 4,614,162 - -0.6 4,614,162 - -0.7 4,614,163 + -0.8 4,614,163 + +0.3 4,614,163 + -0.7 4,614,163 + +0.6 4,614,163 + -0.9 4,614,163 + -0.4 4,614,164 - +0.3 4,614,164 - -0.2 4,614,164 - +1.2 4,614,164 - +0.1 4,614,164 - -1.1 4,614,352 + AO356_20680 0.59 +0.4 4,614,363 - AO356_20680 0.62 +0.4 4,614,363 - AO356_20680 0.62 -0.6 4,614,390 + AO356_20680 0.70 +0.8 4,614,390 + AO356_20680 0.70 +0.8 4,614,390 + AO356_20680 0.70 +0.2 4,614,391 - AO356_20680 0.71 -1.0 4,614,391 - AO356_20680 0.71 -0.3 4,614,391 - AO356_20680 0.71 +1.8 4,614,408 + AO356_20680 0.76 +0.0 4,614,409 - AO356_20680 0.76 +0.8 4,614,409 - AO356_20680 0.76 +1.3 4,614,423 + AO356_20680 0.80 -0.7 4,614,423 + AO356_20680 0.80 +0.6 4,614,423 + AO356_20680 0.80 -0.2 4,614,423 + AO356_20680 0.80 +0.5 4,614,423 + AO356_20680 0.80 -0.2 4,614,424 - AO356_20680 0.80 +0.7 4,614,424 - AO356_20680 0.80 -0.1 4,614,424 - AO356_20680 0.80 -0.6 4,614,424 - AO356_20680 0.80 +0.2 4,614,438 + AO356_20680 0.85 +0.6 4,614,438 + AO356_20680 0.85 +0.8 4,614,439 - AO356_20680 0.85 +0.5 4,614,459 + +0.4 4,614,459 + -0.1 4,614,460 - -0.5 4,614,478 + -0.4 4,614,549 + AO356_20685 0.10 -0.1 4,614,550 - AO356_20685 0.10 +0.1 4,614,550 - AO356_20685 0.10 -0.2 4,614,702 - AO356_20685 0.34 -0.8 4,614,825 + AO356_20685 0.53 -0.1 4,614,832 + AO356_20685 0.54 +0.1 4,614,832 + AO356_20685 0.54 -0.1 4,614,891 - AO356_20685 0.64 -1.2
Or see this region's nucleotide sequence