Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_11770 and AO356_11775 are separated by 1 nucleotides AO356_11775 and AO356_11780 are separated by 62 nucleotides
AO356_11770: AO356_11770 - nicotinate phosphoribosyltransferase, at 2,664,431 to 2,665,660
_11770
AO356_11775: AO356_11775 - NAD synthetase, at 2,665,662 to 2,666,492
_11775
AO356_11780: AO356_11780 - chemotaxis protein, at 2,666,555 to 2,668,444
_11780
Position (kb)
2665
2666
2667 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2664.737 kb on + strand, within AO356_11770 at 2664.738 kb on - strand, within AO356_11770 at 2664.860 kb on + strand, within AO356_11770 at 2664.860 kb on + strand, within AO356_11770 at 2664.860 kb on + strand, within AO356_11770 at 2664.861 kb on - strand, within AO356_11770 at 2664.861 kb on - strand, within AO356_11770 at 2664.899 kb on + strand, within AO356_11770 at 2664.899 kb on + strand, within AO356_11770 at 2664.899 kb on + strand, within AO356_11770 at 2664.899 kb on + strand, within AO356_11770 at 2664.900 kb on - strand, within AO356_11770 at 2664.900 kb on - strand, within AO356_11770 at 2665.194 kb on - strand, within AO356_11770 at 2665.265 kb on + strand, within AO356_11770 at 2665.265 kb on + strand, within AO356_11770 at 2665.265 kb on + strand, within AO356_11770 at 2665.265 kb on + strand, within AO356_11770 at 2665.265 kb on + strand, within AO356_11770 at 2665.265 kb on + strand, within AO356_11770 at 2665.265 kb on + strand, within AO356_11770 at 2665.265 kb on + strand, within AO356_11770 at 2665.265 kb on + strand, within AO356_11770 at 2665.266 kb on - strand, within AO356_11770 at 2665.266 kb on - strand, within AO356_11770 at 2665.266 kb on - strand, within AO356_11770 at 2665.266 kb on - strand, within AO356_11770 at 2665.266 kb on - strand, within AO356_11770 at 2665.280 kb on + strand, within AO356_11770 at 2665.280 kb on + strand, within AO356_11770 at 2665.280 kb on + strand, within AO356_11770 at 2665.281 kb on - strand, within AO356_11770 at 2665.281 kb on - strand, within AO356_11770 at 2665.369 kb on + strand, within AO356_11770 at 2665.661 kb on + strand at 2665.661 kb on + strand at 2665.661 kb on + strand at 2665.661 kb on + strand at 2665.662 kb on - strand at 2665.662 kb on - strand at 2665.662 kb on - strand at 2665.662 kb on - strand at 2665.662 kb on - strand at 2665.662 kb on - strand at 2665.662 kb on - strand at 2665.765 kb on + strand, within AO356_11775 at 2665.765 kb on + strand, within AO356_11775 at 2665.766 kb on - strand, within AO356_11775 at 2665.888 kb on - strand, within AO356_11775 at 2665.920 kb on + strand, within AO356_11775 at 2665.920 kb on + strand, within AO356_11775 at 2665.921 kb on - strand, within AO356_11775 at 2665.921 kb on - strand, within AO356_11775 at 2665.921 kb on - strand, within AO356_11775 at 2665.921 kb on - strand, within AO356_11775 at 2666.118 kb on + strand, within AO356_11775 at 2666.118 kb on + strand, within AO356_11775 at 2666.119 kb on - strand, within AO356_11775 at 2666.119 kb on - strand, within AO356_11775 at 2666.119 kb on - strand, within AO356_11775 at 2666.119 kb on - strand, within AO356_11775 at 2666.134 kb on + strand, within AO356_11775 at 2666.134 kb on + strand, within AO356_11775 at 2666.134 kb on + strand, within AO356_11775 at 2666.134 kb on + strand, within AO356_11775 at 2666.134 kb on + strand, within AO356_11775 at 2666.134 kb on + strand, within AO356_11775 at 2666.134 kb on + strand, within AO356_11775 at 2666.134 kb on + strand, within AO356_11775 at 2666.134 kb on + strand, within AO356_11775 at 2666.135 kb on - strand, within AO356_11775 at 2666.135 kb on - strand, within AO356_11775 at 2666.135 kb on - strand, within AO356_11775 at 2666.135 kb on - strand, within AO356_11775 at 2666.358 kb on + strand, within AO356_11775 at 2666.359 kb on - strand, within AO356_11775 at 2666.359 kb on - strand, within AO356_11775 at 2666.359 kb on - strand, within AO356_11775 at 2666.370 kb on + strand, within AO356_11775 at 2666.371 kb on - strand, within AO356_11775 at 2666.371 kb on - strand, within AO356_11775 at 2666.371 kb on - strand, within AO356_11775 at 2666.388 kb on + strand, within AO356_11775 at 2666.388 kb on + strand, within AO356_11775 at 2666.389 kb on - strand, within AO356_11775 at 2666.389 kb on - strand, within AO356_11775 at 2666.442 kb on + strand at 2666.442 kb on + strand at 2666.442 kb on + strand at 2666.442 kb on + strand at 2666.442 kb on + strand at 2666.442 kb on + strand at 2666.442 kb on + strand at 2666.443 kb on - strand at 2666.443 kb on - strand at 2666.443 kb on - strand at 2666.443 kb on - strand at 2666.443 kb on - strand at 2666.490 kb on + strand at 2666.491 kb on - strand at 2666.491 kb on - strand at 2666.491 kb on - strand at 2666.491 kb on - strand at 2666.491 kb on - strand at 2666.491 kb on - strand at 2666.491 kb on - strand at 2666.504 kb on + strand at 2666.504 kb on + strand at 2666.504 kb on + strand at 2666.504 kb on + strand at 2666.505 kb on - strand at 2666.505 kb on - strand at 2666.505 kb on - strand at 2666.505 kb on - strand at 2666.505 kb on - strand at 2666.569 kb on + strand at 2666.569 kb on + strand at 2666.569 kb on + strand at 2666.569 kb on + strand at 2666.569 kb on + strand at 2666.569 kb on + strand at 2666.570 kb on - strand at 2666.570 kb on - strand at 2666.570 kb on - strand at 2666.570 kb on - strand at 2666.570 kb on - strand at 2666.764 kb on + strand, within AO356_11780 at 2666.764 kb on + strand, within AO356_11780 at 2666.764 kb on + strand, within AO356_11780 at 2666.764 kb on + strand, within AO356_11780 at 2666.765 kb on - strand, within AO356_11780 at 2666.765 kb on - strand, within AO356_11780 at 2666.765 kb on - strand, within AO356_11780 at 2666.765 kb on - strand, within AO356_11780 at 2666.765 kb on - strand, within AO356_11780 at 2666.765 kb on - strand, within AO356_11780 at 2666.765 kb on - strand, within AO356_11780 at 2666.768 kb on + strand, within AO356_11780 at 2666.768 kb on + strand, within AO356_11780 at 2666.768 kb on + strand, within AO356_11780 at 2666.768 kb on + strand, within AO356_11780 at 2666.769 kb on - strand, within AO356_11780 at 2666.769 kb on - strand, within AO356_11780 at 2666.809 kb on + strand, within AO356_11780 at 2666.810 kb on - strand, within AO356_11780 at 2666.830 kb on - strand, within AO356_11780 at 2667.061 kb on + strand, within AO356_11780 at 2667.061 kb on + strand, within AO356_11780 at 2667.061 kb on + strand, within AO356_11780 at 2667.061 kb on + strand, within AO356_11780 at 2667.062 kb on - strand, within AO356_11780 at 2667.062 kb on - strand, within AO356_11780 at 2667.113 kb on - strand, within AO356_11780 at 2667.113 kb on - strand, within AO356_11780 at 2667.151 kb on + strand, within AO356_11780 at 2667.151 kb on + strand, within AO356_11780 at 2667.151 kb on + strand, within AO356_11780 at 2667.151 kb on + strand, within AO356_11780 at 2667.151 kb on + strand, within AO356_11780 at 2667.151 kb on + strand, within AO356_11780 at 2667.152 kb on - strand, within AO356_11780 at 2667.152 kb on - strand, within AO356_11780 at 2667.152 kb on - strand, within AO356_11780 at 2667.283 kb on + strand, within AO356_11780
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 2,664,737 + AO356_11770 0.25 +0.8 2,664,738 - AO356_11770 0.25 +0.9 2,664,860 + AO356_11770 0.35 -0.9 2,664,860 + AO356_11770 0.35 -0.1 2,664,860 + AO356_11770 0.35 +0.0 2,664,861 - AO356_11770 0.35 +0.3 2,664,861 - AO356_11770 0.35 -0.4 2,664,899 + AO356_11770 0.38 +0.8 2,664,899 + AO356_11770 0.38 +0.3 2,664,899 + AO356_11770 0.38 +1.0 2,664,899 + AO356_11770 0.38 +0.2 2,664,900 - AO356_11770 0.38 -0.6 2,664,900 - AO356_11770 0.38 -1.1 2,665,194 - AO356_11770 0.62 -0.3 2,665,265 + AO356_11770 0.68 -0.8 2,665,265 + AO356_11770 0.68 +0.2 2,665,265 + AO356_11770 0.68 -0.5 2,665,265 + AO356_11770 0.68 -0.4 2,665,265 + AO356_11770 0.68 +0.3 2,665,265 + AO356_11770 0.68 +1.1 2,665,265 + AO356_11770 0.68 +2.0 2,665,265 + AO356_11770 0.68 +0.3 2,665,265 + AO356_11770 0.68 -0.3 2,665,266 - AO356_11770 0.68 -0.7 2,665,266 - AO356_11770 0.68 +0.4 2,665,266 - AO356_11770 0.68 +0.3 2,665,266 - AO356_11770 0.68 +0.2 2,665,266 - AO356_11770 0.68 +0.1 2,665,280 + AO356_11770 0.69 +0.3 2,665,280 + AO356_11770 0.69 -0.5 2,665,280 + AO356_11770 0.69 +0.1 2,665,281 - AO356_11770 0.69 +0.1 2,665,281 - AO356_11770 0.69 +1.0 2,665,369 + AO356_11770 0.76 +0.6 2,665,661 + -0.1 2,665,661 + +0.2 2,665,661 + +0.1 2,665,661 + +0.4 2,665,662 - -0.0 2,665,662 - +0.4 2,665,662 - +0.4 2,665,662 - +0.1 2,665,662 - +0.7 2,665,662 - -0.2 2,665,662 - +0.5 2,665,765 + AO356_11775 0.12 +0.4 2,665,765 + AO356_11775 0.12 +0.2 2,665,766 - AO356_11775 0.13 -0.2 2,665,888 - AO356_11775 0.27 +0.1 2,665,920 + AO356_11775 0.31 -0.1 2,665,920 + AO356_11775 0.31 +0.2 2,665,921 - AO356_11775 0.31 -1.8 2,665,921 - AO356_11775 0.31 +0.7 2,665,921 - AO356_11775 0.31 -0.0 2,665,921 - AO356_11775 0.31 -0.1 2,666,118 + AO356_11775 0.55 -0.1 2,666,118 + AO356_11775 0.55 -0.6 2,666,119 - AO356_11775 0.55 -0.7 2,666,119 - AO356_11775 0.55 +0.1 2,666,119 - AO356_11775 0.55 +1.0 2,666,119 - AO356_11775 0.55 +1.1 2,666,134 + AO356_11775 0.57 -0.2 2,666,134 + AO356_11775 0.57 -0.6 2,666,134 + AO356_11775 0.57 -0.6 2,666,134 + AO356_11775 0.57 -0.6 2,666,134 + AO356_11775 0.57 -0.0 2,666,134 + AO356_11775 0.57 +0.0 2,666,134 + AO356_11775 0.57 +0.1 2,666,134 + AO356_11775 0.57 +0.5 2,666,134 + AO356_11775 0.57 +0.7 2,666,135 - AO356_11775 0.57 +0.1 2,666,135 - AO356_11775 0.57 +0.5 2,666,135 - AO356_11775 0.57 +0.4 2,666,135 - AO356_11775 0.57 -0.7 2,666,358 + AO356_11775 0.84 +0.4 2,666,359 - AO356_11775 0.84 -0.0 2,666,359 - AO356_11775 0.84 +0.6 2,666,359 - AO356_11775 0.84 +0.1 2,666,370 + AO356_11775 0.85 -0.9 2,666,371 - AO356_11775 0.85 -0.6 2,666,371 - AO356_11775 0.85 +0.8 2,666,371 - AO356_11775 0.85 +0.2 2,666,388 + AO356_11775 0.87 +0.2 2,666,388 + AO356_11775 0.87 -0.1 2,666,389 - AO356_11775 0.87 +1.1 2,666,389 - AO356_11775 0.87 +0.2 2,666,442 + +0.4 2,666,442 + +0.3 2,666,442 + +0.6 2,666,442 + +0.4 2,666,442 + -0.4 2,666,442 + +0.6 2,666,442 + -0.2 2,666,443 - -0.0 2,666,443 - +0.3 2,666,443 - -1.8 2,666,443 - +0.4 2,666,443 - +0.2 2,666,490 + +0.4 2,666,491 - +0.2 2,666,491 - +0.8 2,666,491 - +1.0 2,666,491 - +0.4 2,666,491 - +1.5 2,666,491 - -1.0 2,666,491 - +0.7 2,666,504 + +0.2 2,666,504 + -0.1 2,666,504 + -0.7 2,666,504 + +0.2 2,666,505 - -0.9 2,666,505 - -0.9 2,666,505 - +0.3 2,666,505 - +0.8 2,666,505 - +0.9 2,666,569 + -0.1 2,666,569 + +0.2 2,666,569 + -0.7 2,666,569 + -0.5 2,666,569 + -0.4 2,666,569 + +1.8 2,666,570 - +0.2 2,666,570 - -0.0 2,666,570 - -0.0 2,666,570 - -0.1 2,666,570 - -0.0 2,666,764 + AO356_11780 0.11 -1.4 2,666,764 + AO356_11780 0.11 -0.4 2,666,764 + AO356_11780 0.11 +0.3 2,666,764 + AO356_11780 0.11 -0.4 2,666,765 - AO356_11780 0.11 -0.2 2,666,765 - AO356_11780 0.11 -1.1 2,666,765 - AO356_11780 0.11 -0.1 2,666,765 - AO356_11780 0.11 +1.0 2,666,765 - AO356_11780 0.11 +0.4 2,666,765 - AO356_11780 0.11 +0.7 2,666,765 - AO356_11780 0.11 -0.9 2,666,768 + AO356_11780 0.11 +0.3 2,666,768 + AO356_11780 0.11 +0.0 2,666,768 + AO356_11780 0.11 -0.4 2,666,768 + AO356_11780 0.11 -2.5 2,666,769 - AO356_11780 0.11 -0.2 2,666,769 - AO356_11780 0.11 -0.3 2,666,809 + AO356_11780 0.13 +0.1 2,666,810 - AO356_11780 0.13 -0.6 2,666,830 - AO356_11780 0.15 +0.2 2,667,061 + AO356_11780 0.27 -0.4 2,667,061 + AO356_11780 0.27 -0.4 2,667,061 + AO356_11780 0.27 +0.2 2,667,061 + AO356_11780 0.27 +0.1 2,667,062 - AO356_11780 0.27 -0.1 2,667,062 - AO356_11780 0.27 -0.0 2,667,113 - AO356_11780 0.30 +0.1 2,667,113 - AO356_11780 0.30 -0.3 2,667,151 + AO356_11780 0.32 -0.4 2,667,151 + AO356_11780 0.32 +0.3 2,667,151 + AO356_11780 0.32 -1.7 2,667,151 + AO356_11780 0.32 -0.5 2,667,151 + AO356_11780 0.32 +1.6 2,667,151 + AO356_11780 0.32 +0.4 2,667,152 - AO356_11780 0.32 +0.8 2,667,152 - AO356_11780 0.32 -0.1 2,667,152 - AO356_11780 0.32 +0.5 2,667,283 + AO356_11780 0.39 -0.3
Or see this region's nucleotide sequence