Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01975

Experiment: LB 37C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_01970 and AO356_01975 are separated by 43 nucleotidesAO356_01975 and AO356_01980 are separated by 3 nucleotidesAO356_01980 and AO356_01985 are separated by 104 nucleotides AO356_01970: AO356_01970 - phage capsid protein, at 438,088 to 438,918 _01970 AO356_01975: AO356_01975 - capsid protein, at 438,962 to 439,981 _01975 AO356_01980: AO356_01980 - terminase, at 439,985 to 440,686 _01980 AO356_01985: AO356_01985 - head completion/stabilization protein, at 440,791 to 441,252 _01985 Position (kb) 438 439 440Strain fitness (log2 ratio) -2 -1 0 1 2at 437.970 kb on + strandat 437.970 kb on + strandat 437.971 kb on - strandat 437.983 kb on + strandat 437.984 kb on - strandat 438.205 kb on + strand, within AO356_01970at 438.205 kb on + strand, within AO356_01970at 438.268 kb on + strand, within AO356_01970at 438.394 kb on + strand, within AO356_01970at 438.394 kb on + strand, within AO356_01970at 438.394 kb on + strand, within AO356_01970at 438.394 kb on + strand, within AO356_01970at 438.394 kb on + strand, within AO356_01970at 438.394 kb on + strand, within AO356_01970at 438.395 kb on - strand, within AO356_01970at 438.395 kb on - strand, within AO356_01970at 438.395 kb on - strand, within AO356_01970at 438.442 kb on + strand, within AO356_01970at 438.442 kb on + strand, within AO356_01970at 438.442 kb on + strand, within AO356_01970at 438.442 kb on + strand, within AO356_01970at 438.547 kb on + strand, within AO356_01970at 438.548 kb on - strand, within AO356_01970at 438.567 kb on + strand, within AO356_01970at 438.917 kb on - strandat 438.957 kb on + strandat 438.973 kb on + strandat 438.996 kb on - strandat 438.996 kb on - strandat 438.996 kb on - strandat 438.996 kb on - strandat 438.996 kb on - strandat 439.054 kb on - strandat 439.246 kb on + strand, within AO356_01975at 439.562 kb on + strand, within AO356_01975at 439.563 kb on - strand, within AO356_01975at 439.563 kb on - strand, within AO356_01975at 439.677 kb on - strand, within AO356_01975at 439.781 kb on + strand, within AO356_01975at 439.781 kb on + strand, within AO356_01975at 439.781 kb on + strand, within AO356_01975at 439.781 kb on + strand, within AO356_01975at 439.781 kb on + strand, within AO356_01975at 439.782 kb on - strand, within AO356_01975at 439.782 kb on - strand, within AO356_01975at 439.782 kb on - strand, within AO356_01975at 439.782 kb on - strand, within AO356_01975at 439.782 kb on - strand, within AO356_01975at 439.782 kb on - strand, within AO356_01975at 439.832 kb on + strand, within AO356_01975at 439.832 kb on + strand, within AO356_01975at 439.833 kb on - strand, within AO356_01975at 439.833 kb on - strand, within AO356_01975at 439.859 kb on + strand, within AO356_01975at 439.860 kb on - strand, within AO356_01975at 439.860 kb on - strand, within AO356_01975at 439.860 kb on - strand, within AO356_01975at 439.899 kb on - strandat 439.919 kb on + strandat 439.919 kb on + strandat 439.920 kb on - strandat 439.935 kb on - strandat 440.084 kb on + strand, within AO356_01980at 440.085 kb on - strand, within AO356_01980at 440.186 kb on + strand, within AO356_01980at 440.186 kb on + strand, within AO356_01980at 440.186 kb on + strand, within AO356_01980at 440.187 kb on - strand, within AO356_01980at 440.187 kb on - strand, within AO356_01980at 440.195 kb on + strand, within AO356_01980at 440.195 kb on + strand, within AO356_01980at 440.196 kb on - strand, within AO356_01980at 440.196 kb on - strand, within AO356_01980at 440.309 kb on + strand, within AO356_01980at 440.309 kb on + strand, within AO356_01980at 440.310 kb on - strand, within AO356_01980at 440.310 kb on - strand, within AO356_01980at 440.790 kb on + strandat 440.790 kb on + strandat 440.790 kb on + strandat 440.791 kb on - strandat 440.791 kb on - strandat 440.791 kb on - strandat 440.805 kb on - strandat 440.832 kb on + strandat 440.833 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB 37C
remove
437,970 + -0.2
437,970 + -1.3
437,971 - +0.0
437,983 + -0.9
437,984 - +0.2
438,205 + AO356_01970 0.14 +0.1
438,205 + AO356_01970 0.14 -2.3
438,268 + AO356_01970 0.22 +0.1
438,394 + AO356_01970 0.37 -0.3
438,394 + AO356_01970 0.37 -0.4
438,394 + AO356_01970 0.37 -1.2
438,394 + AO356_01970 0.37 +0.5
438,394 + AO356_01970 0.37 -0.4
438,394 + AO356_01970 0.37 +0.5
438,395 - AO356_01970 0.37 -0.2
438,395 - AO356_01970 0.37 +0.3
438,395 - AO356_01970 0.37 +1.0
438,442 + AO356_01970 0.43 -0.6
438,442 + AO356_01970 0.43 -0.1
438,442 + AO356_01970 0.43 -0.3
438,442 + AO356_01970 0.43 +0.1
438,547 + AO356_01970 0.55 +0.3
438,548 - AO356_01970 0.55 +0.5
438,567 + AO356_01970 0.58 -1.1
438,917 - +0.0
438,957 + +0.2
438,973 + -1.1
438,996 - +0.2
438,996 - +0.5
438,996 - +0.6
438,996 - +1.0
438,996 - +0.2
439,054 - -0.2
439,246 + AO356_01975 0.28 -0.2
439,562 + AO356_01975 0.59 -0.1
439,563 - AO356_01975 0.59 +2.7
439,563 - AO356_01975 0.59 -0.2
439,677 - AO356_01975 0.70 +0.2
439,781 + AO356_01975 0.80 -0.6
439,781 + AO356_01975 0.80 -0.3
439,781 + AO356_01975 0.80 -0.2
439,781 + AO356_01975 0.80 +0.4
439,781 + AO356_01975 0.80 -0.2
439,782 - AO356_01975 0.80 +1.0
439,782 - AO356_01975 0.80 +0.8
439,782 - AO356_01975 0.80 +0.3
439,782 - AO356_01975 0.80 +0.1
439,782 - AO356_01975 0.80 -0.4
439,782 - AO356_01975 0.80 -0.7
439,832 + AO356_01975 0.85 -0.3
439,832 + AO356_01975 0.85 -0.3
439,833 - AO356_01975 0.85 -0.1
439,833 - AO356_01975 0.85 -0.3
439,859 + AO356_01975 0.88 -0.2
439,860 - AO356_01975 0.88 +0.3
439,860 - AO356_01975 0.88 +0.8
439,860 - AO356_01975 0.88 +0.0
439,899 - +0.9
439,919 + -1.3
439,919 + -0.1
439,920 - +0.3
439,935 - +0.2
440,084 + AO356_01980 0.14 -1.7
440,085 - AO356_01980 0.14 +0.3
440,186 + AO356_01980 0.29 -0.1
440,186 + AO356_01980 0.29 -0.8
440,186 + AO356_01980 0.29 -0.9
440,187 - AO356_01980 0.29 +0.2
440,187 - AO356_01980 0.29 -0.8
440,195 + AO356_01980 0.30 +0.2
440,195 + AO356_01980 0.30 -0.6
440,196 - AO356_01980 0.30 -0.2
440,196 - AO356_01980 0.30 -1.0
440,309 + AO356_01980 0.46 -0.7
440,309 + AO356_01980 0.46 -0.7
440,310 - AO356_01980 0.46 -0.2
440,310 - AO356_01980 0.46 -0.2
440,790 + -1.1
440,790 + -0.3
440,790 + -1.7
440,791 - -0.5
440,791 - +0.9
440,791 - -0.7
440,805 - -0.8
440,832 + -0.9
440,833 - +0.2

Or see this region's nucleotide sequence