Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00100

Experiment: LB 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00095 and AO356_00100 are separated by 144 nucleotidesAO356_00100 and AO356_00105 overlap by 4 nucleotidesAO356_00105 and AO356_00110 are separated by 86 nucleotides AO356_00095: AO356_00095 - hypothetical protein, at 18,387 to 19,574 _00095 AO356_00100: AO356_00100 - conjugal transfer protein, at 19,719 to 20,474 _00100 AO356_00105: AO356_00105 - integrase, at 20,471 to 20,989 _00105 AO356_00110: AO356_00110 - hypothetical protein, at 21,076 to 21,318 _00110 Position (kb) 19 20 21Strain fitness (log2 ratio) -2 -1 0 1 2 3at 18.790 kb on + strand, within AO356_00095at 18.790 kb on + strand, within AO356_00095at 18.804 kb on + strand, within AO356_00095at 18.804 kb on + strand, within AO356_00095at 18.804 kb on + strand, within AO356_00095at 18.805 kb on - strand, within AO356_00095at 18.805 kb on - strand, within AO356_00095at 18.872 kb on - strand, within AO356_00095at 18.911 kb on + strand, within AO356_00095at 18.911 kb on + strand, within AO356_00095at 18.912 kb on - strand, within AO356_00095at 18.912 kb on - strand, within AO356_00095at 18.973 kb on + strand, within AO356_00095at 18.973 kb on + strand, within AO356_00095at 18.974 kb on - strand, within AO356_00095at 19.166 kb on + strand, within AO356_00095at 19.166 kb on + strand, within AO356_00095at 19.167 kb on - strand, within AO356_00095at 19.171 kb on + strand, within AO356_00095at 19.172 kb on - strand, within AO356_00095at 19.172 kb on - strand, within AO356_00095at 19.184 kb on + strand, within AO356_00095at 19.184 kb on + strand, within AO356_00095at 19.185 kb on - strand, within AO356_00095at 19.190 kb on + strand, within AO356_00095at 19.191 kb on - strand, within AO356_00095at 19.191 kb on - strand, within AO356_00095at 19.375 kb on - strand, within AO356_00095at 19.379 kb on + strand, within AO356_00095at 19.380 kb on - strand, within AO356_00095at 19.674 kb on + strandat 19.674 kb on + strandat 19.675 kb on - strandat 19.675 kb on - strandat 19.675 kb on - strandat 19.675 kb on - strandat 19.731 kb on + strandat 19.732 kb on - strandat 19.732 kb on - strandat 19.857 kb on + strand, within AO356_00100at 19.857 kb on + strand, within AO356_00100at 19.908 kb on + strand, within AO356_00100at 19.908 kb on + strand, within AO356_00100at 20.100 kb on + strand, within AO356_00100at 20.101 kb on - strand, within AO356_00100at 20.115 kb on + strand, within AO356_00100at 20.177 kb on + strand, within AO356_00100at 20.191 kb on + strand, within AO356_00100at 20.271 kb on - strand, within AO356_00100at 20.431 kb on + strandat 20.432 kb on - strandat 20.556 kb on + strand, within AO356_00105at 20.557 kb on - strand, within AO356_00105at 20.568 kb on + strand, within AO356_00105at 20.569 kb on - strand, within AO356_00105at 20.578 kb on + strand, within AO356_00105at 20.579 kb on - strand, within AO356_00105at 20.579 kb on - strand, within AO356_00105at 20.579 kb on - strand, within AO356_00105at 20.637 kb on + strand, within AO356_00105at 20.637 kb on + strand, within AO356_00105at 20.637 kb on + strand, within AO356_00105at 20.638 kb on - strand, within AO356_00105at 20.698 kb on + strand, within AO356_00105at 20.709 kb on + strand, within AO356_00105at 20.770 kb on + strand, within AO356_00105at 20.827 kb on - strand, within AO356_00105at 20.949 kb on + strandat 20.991 kb on + strandat 21.091 kb on + strandat 21.091 kb on + strandat 21.092 kb on - strandat 21.092 kb on - strandat 21.121 kb on - strand, within AO356_00110at 21.121 kb on - strand, within AO356_00110at 21.124 kb on + strand, within AO356_00110at 21.124 kb on + strand, within AO356_00110at 21.124 kb on + strand, within AO356_00110at 21.124 kb on + strand, within AO356_00110at 21.124 kb on + strand, within AO356_00110at 21.125 kb on - strand, within AO356_00110at 21.189 kb on + strand, within AO356_00110at 21.190 kb on - strand, within AO356_00110at 21.190 kb on - strand, within AO356_00110at 21.196 kb on + strand, within AO356_00110at 21.207 kb on + strand, within AO356_00110at 21.207 kb on + strand, within AO356_00110at 21.207 kb on + strand, within AO356_00110at 21.207 kb on + strand, within AO356_00110at 21.208 kb on - strand, within AO356_00110at 21.208 kb on - strand, within AO356_00110at 21.208 kb on - strand, within AO356_00110at 21.208 kb on - strand, within AO356_00110at 21.208 kb on - strand, within AO356_00110at 21.451 kb on + strandat 21.463 kb on - strandat 21.463 kb on - strandat 21.463 kb on - strandat 21.472 kb on - strandat 21.472 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 37C
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18,790 + AO356_00095 0.34 +0.2
18,790 + AO356_00095 0.34 +1.1
18,804 + AO356_00095 0.35 -1.2
18,804 + AO356_00095 0.35 +1.1
18,804 + AO356_00095 0.35 -0.5
18,805 - AO356_00095 0.35 -0.8
18,805 - AO356_00095 0.35 +0.8
18,872 - AO356_00095 0.41 +0.4
18,911 + AO356_00095 0.44 -0.5
18,911 + AO356_00095 0.44 +0.3
18,912 - AO356_00095 0.44 +0.8
18,912 - AO356_00095 0.44 -1.9
18,973 + AO356_00095 0.49 +1.2
18,973 + AO356_00095 0.49 -0.4
18,974 - AO356_00095 0.49 +0.1
19,166 + AO356_00095 0.66 +0.6
19,166 + AO356_00095 0.66 -0.7
19,167 - AO356_00095 0.66 +0.5
19,171 + AO356_00095 0.66 -0.7
19,172 - AO356_00095 0.66 +0.6
19,172 - AO356_00095 0.66 -0.4
19,184 + AO356_00095 0.67 +0.3
19,184 + AO356_00095 0.67 +0.3
19,185 - AO356_00095 0.67 +0.1
19,190 + AO356_00095 0.68 +0.4
19,191 - AO356_00095 0.68 -0.4
19,191 - AO356_00095 0.68 -1.3
19,375 - AO356_00095 0.83 +0.3
19,379 + AO356_00095 0.84 +0.5
19,380 - AO356_00095 0.84 +0.2
19,674 + -0.1
19,674 + -0.4
19,675 - +3.4
19,675 - +0.1
19,675 - -0.2
19,675 - -0.8
19,731 + +1.3
19,732 - +0.9
19,732 - -0.2
19,857 + AO356_00100 0.18 +0.1
19,857 + AO356_00100 0.18 -1.4
19,908 + AO356_00100 0.25 +0.4
19,908 + AO356_00100 0.25 +0.8
20,100 + AO356_00100 0.50 -0.1
20,101 - AO356_00100 0.51 -0.6
20,115 + AO356_00100 0.52 -0.4
20,177 + AO356_00100 0.61 -0.5
20,191 + AO356_00100 0.62 -0.5
20,271 - AO356_00100 0.73 -1.2
20,431 + +0.3
20,432 - -0.5
20,556 + AO356_00105 0.16 -0.4
20,557 - AO356_00105 0.17 +0.5
20,568 + AO356_00105 0.19 +0.1
20,569 - AO356_00105 0.19 +0.5
20,578 + AO356_00105 0.21 -0.0
20,579 - AO356_00105 0.21 -0.0
20,579 - AO356_00105 0.21 -0.5
20,579 - AO356_00105 0.21 -0.4
20,637 + AO356_00105 0.32 +0.0
20,637 + AO356_00105 0.32 +0.5
20,637 + AO356_00105 0.32 +0.3
20,638 - AO356_00105 0.32 +0.4
20,698 + AO356_00105 0.44 +0.5
20,709 + AO356_00105 0.46 +0.3
20,770 + AO356_00105 0.58 +0.5
20,827 - AO356_00105 0.69 +0.1
20,949 + +0.1
20,991 + +0.2
21,091 + +1.4
21,091 + +0.8
21,092 - +0.2
21,092 - +0.6
21,121 - AO356_00110 0.19 +1.0
21,121 - AO356_00110 0.19 +0.4
21,124 + AO356_00110 0.20 -0.1
21,124 + AO356_00110 0.20 +0.2
21,124 + AO356_00110 0.20 +0.4
21,124 + AO356_00110 0.20 +1.0
21,124 + AO356_00110 0.20 +0.7
21,125 - AO356_00110 0.20 +0.3
21,189 + AO356_00110 0.47 -0.9
21,190 - AO356_00110 0.47 +0.2
21,190 - AO356_00110 0.47 -0.5
21,196 + AO356_00110 0.49 -0.3
21,207 + AO356_00110 0.54 -0.2
21,207 + AO356_00110 0.54 +0.1
21,207 + AO356_00110 0.54 +1.3
21,207 + AO356_00110 0.54 +0.8
21,208 - AO356_00110 0.54 +0.4
21,208 - AO356_00110 0.54 -0.6
21,208 - AO356_00110 0.54 -0.3
21,208 - AO356_00110 0.54 -0.5
21,208 - AO356_00110 0.54 +0.0
21,451 + +1.0
21,463 - -0.1
21,463 - +0.6
21,463 - +0.6
21,472 - +1.0
21,472 - -0.3

Or see this region's nucleotide sequence