Experiment: thiosulfate 0.25 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_554 and Pf6N2E2_555 are separated by 29 nucleotides Pf6N2E2_555 and Pf6N2E2_556 are separated by 83 nucleotides Pf6N2E2_556 and Pf6N2E2_557 are separated by 24 nucleotides Pf6N2E2_557 and Pf6N2E2_558 are separated by 63 nucleotides
Pf6N2E2_554 - Uncharacterized protein ImpC, at 625,804 to 627,285
_554
Pf6N2E2_555 - Uncharacterized protein ImpB, at 627,315 to 627,875
_555
Pf6N2E2_556 - hypothetical protein, at 627,959 to 628,075
_556
Pf6N2E2_557 - Uncharacterized protein homologous to Paeru. PA2364, at 628,100 to 628,549
_557
Pf6N2E2_558 - Uncharacterized protein ImpJ/VasE, at 628,613 to 629,944
_558
Position (kb) 628
629 Strain fitness (log2 ratio) -2
-1
0
1
2 at 627.173 kb on + strand at 627.291 kb on + strand at 627.291 kb on + strand at 627.379 kb on - strand, within Pf6N2E2_555 at 627.814 kb on + strand, within Pf6N2E2_555 at 627.814 kb on + strand at 627.814 kb on + strand, within Pf6N2E2_555 at 627.814 kb on + strand, within Pf6N2E2_555 at 627.815 kb on - strand, within Pf6N2E2_555 at 627.815 kb on - strand, within Pf6N2E2_555 at 627.864 kb on - strand at 628.023 kb on + strand, within Pf6N2E2_556 at 628.036 kb on - strand, within Pf6N2E2_556 at 628.445 kb on + strand, within Pf6N2E2_557 at 628.445 kb on + strand, within Pf6N2E2_557 at 628.445 kb on + strand, within Pf6N2E2_557 at 628.445 kb on + strand, within Pf6N2E2_557 at 628.445 kb on + strand, within Pf6N2E2_557 at 628.445 kb on + strand, within Pf6N2E2_557 at 628.445 kb on + strand, within Pf6N2E2_557 at 628.445 kb on + strand, within Pf6N2E2_557 at 628.446 kb on - strand, within Pf6N2E2_557 at 628.446 kb on - strand, within Pf6N2E2_557 at 628.446 kb on - strand, within Pf6N2E2_557 at 628.446 kb on - strand, within Pf6N2E2_557 at 628.448 kb on - strand, within Pf6N2E2_557 at 628.448 kb on - strand, within Pf6N2E2_557 at 628.448 kb on - strand, within Pf6N2E2_557 at 628.612 kb on + strand at 628.613 kb on - strand at 628.925 kb on + strand, within Pf6N2E2_558 at 628.925 kb on + strand, within Pf6N2E2_558 at 628.925 kb on + strand, within Pf6N2E2_558 at 628.926 kb on - strand, within Pf6N2E2_558 at 629.156 kb on + strand, within Pf6N2E2_558 at 629.393 kb on + strand, within Pf6N2E2_558 at 629.394 kb on - strand, within Pf6N2E2_558
Per-strain Table
Position Strand Gene LocusTag Fraction thiosulfate 0.25 M remove 627,173 + +1.1 627,291 + +0.5 627,291 + -0.2 627,379 - Pf6N2E2_555 0.11 +1.1 627,814 + Pf6N2E2_555 0.89 -1.3 627,814 + +1.8 627,814 + Pf6N2E2_555 0.89 +1.3 627,814 + Pf6N2E2_555 0.89 -2.1 627,815 - Pf6N2E2_555 0.89 -1.3 627,815 - Pf6N2E2_555 0.89 +0.3 627,864 - +1.1 628,023 + Pf6N2E2_556 0.55 -1.5 628,036 - Pf6N2E2_556 0.66 -0.0 628,445 + Pf6N2E2_557 0.77 -1.2 628,445 + Pf6N2E2_557 0.77 -0.2 628,445 + Pf6N2E2_557 0.77 +0.3 628,445 + Pf6N2E2_557 0.77 -0.5 628,445 + Pf6N2E2_557 0.77 -1.2 628,445 + Pf6N2E2_557 0.77 -0.4 628,445 + Pf6N2E2_557 0.77 +1.5 628,445 + Pf6N2E2_557 0.77 -1.0 628,446 - Pf6N2E2_557 0.77 +0.3 628,446 - Pf6N2E2_557 0.77 -0.8 628,446 - Pf6N2E2_557 0.77 +0.3 628,446 - Pf6N2E2_557 0.77 -1.1 628,448 - Pf6N2E2_557 0.77 -0.2 628,448 - Pf6N2E2_557 0.77 -0.2 628,448 - Pf6N2E2_557 0.77 -2.0 628,612 + +0.3 628,613 - +0.3 628,925 + Pf6N2E2_558 0.23 -1.4 628,925 + Pf6N2E2_558 0.23 +1.2 628,925 + Pf6N2E2_558 0.23 +1.2 628,926 - Pf6N2E2_558 0.23 +0.2 629,156 + Pf6N2E2_558 0.41 -0.1 629,393 + Pf6N2E2_558 0.59 -0.6 629,394 - Pf6N2E2_558 0.59 +2.1
Or see this region's nucleotide sequence