Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21590 and BWI76_RS21595 are separated by 139 nucleotides BWI76_RS21595 and BWI76_RS21600 are separated by 175 nucleotides
BWI76_RS21590: BWI76_RS21590 - integrase, at 4,517,330 to 4,518,571
_RS21590
BWI76_RS21595: BWI76_RS21595 - hypothetical protein, at 4,518,711 to 4,519,019
_RS21595
BWI76_RS21600: BWI76_RS21600 - IS3 family transposase, at 4,519,195 to 4,520,306
_RS21600
Position (kb)
4518
4519
4520 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 4517.784 kb on + strand, within BWI76_RS21590 at 4517.794 kb on + strand, within BWI76_RS21590 at 4517.794 kb on + strand, within BWI76_RS21590 at 4517.794 kb on + strand, within BWI76_RS21590 at 4517.794 kb on + strand, within BWI76_RS21590 at 4517.821 kb on - strand, within BWI76_RS21590 at 4517.826 kb on - strand, within BWI76_RS21590 at 4517.877 kb on - strand, within BWI76_RS21590 at 4517.894 kb on + strand, within BWI76_RS21590 at 4517.894 kb on + strand, within BWI76_RS21590 at 4517.897 kb on - strand, within BWI76_RS21590 at 4517.909 kb on + strand, within BWI76_RS21590 at 4518.018 kb on + strand, within BWI76_RS21590 at 4518.165 kb on + strand, within BWI76_RS21590 at 4518.198 kb on - strand, within BWI76_RS21590 at 4518.208 kb on - strand, within BWI76_RS21590 at 4518.339 kb on - strand, within BWI76_RS21590 at 4518.393 kb on + strand, within BWI76_RS21590 at 4518.407 kb on + strand, within BWI76_RS21590 at 4518.407 kb on + strand, within BWI76_RS21590 at 4518.412 kb on + strand, within BWI76_RS21590 at 4518.415 kb on - strand, within BWI76_RS21590 at 4518.477 kb on + strand at 4518.493 kb on - strand at 4518.542 kb on + strand at 4518.542 kb on + strand at 4518.544 kb on + strand at 4518.544 kb on + strand at 4518.550 kb on - strand at 4518.552 kb on - strand at 4518.564 kb on - strand at 4518.564 kb on - strand at 4518.564 kb on - strand at 4518.564 kb on - strand at 4518.595 kb on + strand at 4518.595 kb on + strand at 4518.595 kb on + strand at 4518.618 kb on - strand at 4518.661 kb on + strand at 4518.682 kb on + strand at 4518.682 kb on + strand at 4518.683 kb on - strand at 4518.688 kb on + strand at 4518.748 kb on + strand, within BWI76_RS21595 at 4518.768 kb on - strand, within BWI76_RS21595 at 4518.800 kb on + strand, within BWI76_RS21595 at 4518.808 kb on - strand, within BWI76_RS21595 at 4518.810 kb on + strand, within BWI76_RS21595 at 4518.829 kb on + strand, within BWI76_RS21595 at 4518.971 kb on + strand, within BWI76_RS21595 at 4518.987 kb on + strand, within BWI76_RS21595 at 4518.993 kb on - strand at 4518.995 kb on - strand at 4518.996 kb on - strand at 4519.001 kb on - strand at 4519.042 kb on + strand at 4519.042 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 4,517,784 + BWI76_RS21590 0.37 -0.0 4,517,794 + BWI76_RS21590 0.37 +0.5 4,517,794 + BWI76_RS21590 0.37 +0.8 4,517,794 + BWI76_RS21590 0.37 -0.5 4,517,794 + BWI76_RS21590 0.37 +0.2 4,517,821 - BWI76_RS21590 0.40 +0.3 4,517,826 - BWI76_RS21590 0.40 -1.8 4,517,877 - BWI76_RS21590 0.44 +1.2 4,517,894 + BWI76_RS21590 0.45 +0.2 4,517,894 + BWI76_RS21590 0.45 +0.8 4,517,897 - BWI76_RS21590 0.46 -2.7 4,517,909 + BWI76_RS21590 0.47 -0.4 4,518,018 + BWI76_RS21590 0.55 -2.8 4,518,165 + BWI76_RS21590 0.67 +0.4 4,518,198 - BWI76_RS21590 0.70 -0.1 4,518,208 - BWI76_RS21590 0.71 +0.7 4,518,339 - BWI76_RS21590 0.81 -0.1 4,518,393 + BWI76_RS21590 0.86 +0.6 4,518,407 + BWI76_RS21590 0.87 +1.6 4,518,407 + BWI76_RS21590 0.87 -0.2 4,518,412 + BWI76_RS21590 0.87 -2.3 4,518,415 - BWI76_RS21590 0.87 -1.4 4,518,477 + -2.4 4,518,493 - -2.6 4,518,542 + +0.2 4,518,542 + +5.0 4,518,544 + -1.0 4,518,544 + -1.4 4,518,550 - +3.8 4,518,552 - -0.4 4,518,564 - +0.8 4,518,564 - -0.4 4,518,564 - +0.2 4,518,564 - -3.7 4,518,595 + -1.3 4,518,595 + -0.4 4,518,595 + +0.7 4,518,618 - +0.6 4,518,661 + -3.7 4,518,682 + -0.4 4,518,682 + -0.7 4,518,683 - +1.2 4,518,688 + -1.1 4,518,748 + BWI76_RS21595 0.12 -2.3 4,518,768 - BWI76_RS21595 0.18 +0.1 4,518,800 + BWI76_RS21595 0.29 -0.4 4,518,808 - BWI76_RS21595 0.31 +0.2 4,518,810 + BWI76_RS21595 0.32 +0.0 4,518,829 + BWI76_RS21595 0.38 +0.7 4,518,971 + BWI76_RS21595 0.84 +0.5 4,518,987 + BWI76_RS21595 0.89 -0.8 4,518,993 - -2.6 4,518,995 - -1.3 4,518,996 - +0.3 4,519,001 - +0.2 4,519,042 + +1.2 4,519,042 + -0.1
Or see this region's nucleotide sequence