Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21595

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS21590 and BWI76_RS21595 are separated by 139 nucleotidesBWI76_RS21595 and BWI76_RS21600 are separated by 175 nucleotides BWI76_RS21590: BWI76_RS21590 - integrase, at 4,517,330 to 4,518,571 _RS21590 BWI76_RS21595: BWI76_RS21595 - hypothetical protein, at 4,518,711 to 4,519,019 _RS21595 BWI76_RS21600: BWI76_RS21600 - IS3 family transposase, at 4,519,195 to 4,520,306 _RS21600 Position (kb) 4518 4519 4520Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 4517.784 kb on + strand, within BWI76_RS21590at 4517.794 kb on + strand, within BWI76_RS21590at 4517.794 kb on + strand, within BWI76_RS21590at 4517.794 kb on + strand, within BWI76_RS21590at 4517.794 kb on + strand, within BWI76_RS21590at 4517.821 kb on - strand, within BWI76_RS21590at 4517.826 kb on - strand, within BWI76_RS21590at 4517.877 kb on - strand, within BWI76_RS21590at 4517.894 kb on + strand, within BWI76_RS21590at 4517.894 kb on + strand, within BWI76_RS21590at 4517.897 kb on - strand, within BWI76_RS21590at 4517.909 kb on + strand, within BWI76_RS21590at 4518.018 kb on + strand, within BWI76_RS21590at 4518.165 kb on + strand, within BWI76_RS21590at 4518.198 kb on - strand, within BWI76_RS21590at 4518.208 kb on - strand, within BWI76_RS21590at 4518.339 kb on - strand, within BWI76_RS21590at 4518.393 kb on + strand, within BWI76_RS21590at 4518.407 kb on + strand, within BWI76_RS21590at 4518.407 kb on + strand, within BWI76_RS21590at 4518.412 kb on + strand, within BWI76_RS21590at 4518.415 kb on - strand, within BWI76_RS21590at 4518.477 kb on + strandat 4518.493 kb on - strandat 4518.542 kb on + strandat 4518.542 kb on + strandat 4518.544 kb on + strandat 4518.544 kb on + strandat 4518.550 kb on - strandat 4518.552 kb on - strandat 4518.564 kb on - strandat 4518.564 kb on - strandat 4518.564 kb on - strandat 4518.564 kb on - strandat 4518.595 kb on + strandat 4518.595 kb on + strandat 4518.595 kb on + strandat 4518.618 kb on - strandat 4518.661 kb on + strandat 4518.682 kb on + strandat 4518.682 kb on + strandat 4518.683 kb on - strandat 4518.688 kb on + strandat 4518.748 kb on + strand, within BWI76_RS21595at 4518.768 kb on - strand, within BWI76_RS21595at 4518.800 kb on + strand, within BWI76_RS21595at 4518.808 kb on - strand, within BWI76_RS21595at 4518.810 kb on + strand, within BWI76_RS21595at 4518.829 kb on + strand, within BWI76_RS21595at 4518.971 kb on + strand, within BWI76_RS21595at 4518.987 kb on + strand, within BWI76_RS21595at 4518.993 kb on - strandat 4518.995 kb on - strandat 4518.996 kb on - strandat 4519.001 kb on - strandat 4519.042 kb on + strandat 4519.042 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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4,517,784 + BWI76_RS21590 0.37 -0.0
4,517,794 + BWI76_RS21590 0.37 +0.5
4,517,794 + BWI76_RS21590 0.37 +0.8
4,517,794 + BWI76_RS21590 0.37 -0.5
4,517,794 + BWI76_RS21590 0.37 +0.2
4,517,821 - BWI76_RS21590 0.40 +0.3
4,517,826 - BWI76_RS21590 0.40 -1.8
4,517,877 - BWI76_RS21590 0.44 +1.2
4,517,894 + BWI76_RS21590 0.45 +0.2
4,517,894 + BWI76_RS21590 0.45 +0.8
4,517,897 - BWI76_RS21590 0.46 -2.7
4,517,909 + BWI76_RS21590 0.47 -0.4
4,518,018 + BWI76_RS21590 0.55 -2.8
4,518,165 + BWI76_RS21590 0.67 +0.4
4,518,198 - BWI76_RS21590 0.70 -0.1
4,518,208 - BWI76_RS21590 0.71 +0.7
4,518,339 - BWI76_RS21590 0.81 -0.1
4,518,393 + BWI76_RS21590 0.86 +0.6
4,518,407 + BWI76_RS21590 0.87 +1.6
4,518,407 + BWI76_RS21590 0.87 -0.2
4,518,412 + BWI76_RS21590 0.87 -2.3
4,518,415 - BWI76_RS21590 0.87 -1.4
4,518,477 + -2.4
4,518,493 - -2.6
4,518,542 + +0.2
4,518,542 + +5.0
4,518,544 + -1.0
4,518,544 + -1.4
4,518,550 - +3.8
4,518,552 - -0.4
4,518,564 - +0.8
4,518,564 - -0.4
4,518,564 - +0.2
4,518,564 - -3.7
4,518,595 + -1.3
4,518,595 + -0.4
4,518,595 + +0.7
4,518,618 - +0.6
4,518,661 + -3.7
4,518,682 + -0.4
4,518,682 + -0.7
4,518,683 - +1.2
4,518,688 + -1.1
4,518,748 + BWI76_RS21595 0.12 -2.3
4,518,768 - BWI76_RS21595 0.18 +0.1
4,518,800 + BWI76_RS21595 0.29 -0.4
4,518,808 - BWI76_RS21595 0.31 +0.2
4,518,810 + BWI76_RS21595 0.32 +0.0
4,518,829 + BWI76_RS21595 0.38 +0.7
4,518,971 + BWI76_RS21595 0.84 +0.5
4,518,987 + BWI76_RS21595 0.89 -0.8
4,518,993 - -2.6
4,518,995 - -1.3
4,518,996 - +0.3
4,519,001 - +0.2
4,519,042 + +1.2
4,519,042 + -0.1

Or see this region's nucleotide sequence