Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19245

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19235 and BWI76_RS19240 are separated by 64 nucleotidesBWI76_RS19240 and BWI76_RS19245 are separated by 27 nucleotidesBWI76_RS19245 and BWI76_RS19250 are separated by 384 nucleotides BWI76_RS19235: BWI76_RS19235 - polar amino acid ABC transporter inner membrane subunit, at 4,002,394 to 4,003,086 _RS19235 BWI76_RS19240: BWI76_RS19240 - ABC transporter substrate-binding protein, at 4,003,151 to 4,003,924 _RS19240 BWI76_RS19245: BWI76_RS19245 - dimethylargininase, at 4,003,952 to 4,004,713 _RS19245 BWI76_RS19250: BWI76_RS19250 - multidrug transporter subunit MdtA, at 4,005,098 to 4,006,342 _RS19250 Position (kb) 4003 4004 4005Strain fitness (log2 ratio) -3 -2 -1 0 1at 4003.014 kb on + strand, within BWI76_RS19235at 4003.060 kb on + strandat 4003.221 kb on + strandat 4003.403 kb on - strand, within BWI76_RS19240at 4003.893 kb on - strandat 4003.973 kb on + strandat 4004.152 kb on - strand, within BWI76_RS19245at 4004.159 kb on - strand, within BWI76_RS19245at 4004.271 kb on - strand, within BWI76_RS19245at 4004.273 kb on + strand, within BWI76_RS19245at 4004.588 kb on + strand, within BWI76_RS19245at 4004.662 kb on - strandat 4004.741 kb on + strandat 4004.805 kb on - strandat 4004.994 kb on + strandat 4005.307 kb on - strand, within BWI76_RS19250at 4005.364 kb on - strand, within BWI76_RS19250at 4005.514 kb on - strand, within BWI76_RS19250

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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4,003,014 + BWI76_RS19235 0.89 +1.1
4,003,060 + -1.9
4,003,221 + -0.1
4,003,403 - BWI76_RS19240 0.33 -0.2
4,003,893 - -3.2
4,003,973 + +0.1
4,004,152 - BWI76_RS19245 0.26 -0.2
4,004,159 - BWI76_RS19245 0.27 -2.7
4,004,271 - BWI76_RS19245 0.42 +0.0
4,004,273 + BWI76_RS19245 0.42 -1.3
4,004,588 + BWI76_RS19245 0.83 -1.4
4,004,662 - +0.4
4,004,741 + -2.6
4,004,805 - +0.1
4,004,994 + -1.8
4,005,307 - BWI76_RS19250 0.17 -1.0
4,005,364 - BWI76_RS19250 0.21 +0.8
4,005,514 - BWI76_RS19250 0.33 +0.3

Or see this region's nucleotide sequence