Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14565 and BWI76_RS14570 are separated by 28 nucleotides BWI76_RS14570 and BWI76_RS14575 are separated by 88 nucleotides BWI76_RS14575 and BWI76_RS14580 overlap by 1 nucleotides
BWI76_RS14565: BWI76_RS14565 - cysteine hydrolase, at 3,058,393 to 3,058,926
_RS14565
BWI76_RS14570: BWI76_RS14570 - hypothetical protein, at 3,058,955 to 3,059,515
_RS14570
BWI76_RS14575: BWI76_RS14575 - TENA/THI-4 family protein, at 3,059,604 to 3,060,248
_RS14575
BWI76_RS14580: BWI76_RS14580 - hypothetical protein, at 3,060,248 to 3,061,093
_RS14580
Position (kb)
3058
3059
3060 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3058.017 kb on + strand at 3058.022 kb on + strand at 3058.025 kb on - strand at 3058.025 kb on - strand at 3058.034 kb on - strand at 3058.071 kb on + strand at 3058.117 kb on - strand at 3058.248 kb on - strand at 3058.257 kb on - strand at 3058.266 kb on + strand at 3058.282 kb on + strand at 3058.318 kb on + strand at 3058.353 kb on - strand at 3058.387 kb on + strand at 3058.596 kb on - strand, within BWI76_RS14565 at 3059.281 kb on + strand, within BWI76_RS14570 at 3059.324 kb on + strand, within BWI76_RS14570 at 3059.353 kb on - strand, within BWI76_RS14570 at 3059.370 kb on - strand, within BWI76_RS14570 at 3059.548 kb on + strand at 3059.548 kb on + strand at 3059.651 kb on - strand at 3059.768 kb on + strand, within BWI76_RS14575 at 3059.982 kb on - strand, within BWI76_RS14575 at 3060.294 kb on + strand at 3060.335 kb on - strand, within BWI76_RS14580 at 3060.403 kb on + strand, within BWI76_RS14580 at 3060.411 kb on - strand, within BWI76_RS14580 at 3060.477 kb on + strand, within BWI76_RS14580
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 3,058,017 + -4.0 3,058,022 + +0.1 3,058,025 - -0.9 3,058,025 - -0.0 3,058,034 - +0.5 3,058,071 + -0.8 3,058,117 - +0.5 3,058,248 - +1.2 3,058,257 - +0.7 3,058,266 + +0.5 3,058,282 + -1.0 3,058,318 + +1.3 3,058,353 - +0.8 3,058,387 + -2.5 3,058,596 - BWI76_RS14565 0.38 +0.3 3,059,281 + BWI76_RS14570 0.58 -0.3 3,059,324 + BWI76_RS14570 0.66 -0.5 3,059,353 - BWI76_RS14570 0.71 -1.4 3,059,370 - BWI76_RS14570 0.74 -3.9 3,059,548 + -0.0 3,059,548 + -1.7 3,059,651 - +0.7 3,059,768 + BWI76_RS14575 0.25 +1.2 3,059,982 - BWI76_RS14575 0.59 +0.3 3,060,294 + -0.4 3,060,335 - BWI76_RS14580 0.10 -0.2 3,060,403 + BWI76_RS14580 0.18 -0.1 3,060,411 - BWI76_RS14580 0.19 +0.6 3,060,477 + BWI76_RS14580 0.27 -0.2
Or see this region's nucleotide sequence