Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14225

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14210 and BWI76_RS14215 are separated by 235 nucleotidesBWI76_RS14215 and BWI76_RS14220 are separated by 21 nucleotidesBWI76_RS14220 and BWI76_RS14225 are separated by 53 nucleotidesBWI76_RS14225 and BWI76_RS14230 overlap by 1 nucleotides BWI76_RS14210: BWI76_RS14210 - LysR family transcriptional regulator, at 2,974,662 to 2,975,624 _RS14210 BWI76_RS14215: BWI76_RS14215 - hypothetical protein, at 2,975,860 to 2,976,141 _RS14215 BWI76_RS14220: BWI76_RS14220 - hypothetical protein, at 2,976,163 to 2,976,504 _RS14220 BWI76_RS14225: BWI76_RS14225 - anti-ECF sigma factor ChrR, at 2,976,558 to 2,977,229 _RS14225 BWI76_RS14230: BWI76_RS14230 - flavin monoamine oxidase family protein, at 2,977,229 to 2,978,218 _RS14230 Position (kb) 2976 2977 2978Strain fitness (log2 ratio) -2 -1 0 1 2at 2975.969 kb on + strand, within BWI76_RS14215at 2975.970 kb on - strand, within BWI76_RS14215at 2975.998 kb on - strand, within BWI76_RS14215at 2976.025 kb on - strand, within BWI76_RS14215at 2976.097 kb on + strand, within BWI76_RS14215at 2976.097 kb on + strand, within BWI76_RS14215at 2976.110 kb on + strand, within BWI76_RS14215at 2976.123 kb on + strandat 2976.133 kb on - strandat 2976.672 kb on + strand, within BWI76_RS14225at 2976.680 kb on - strand, within BWI76_RS14225at 2977.381 kb on + strand, within BWI76_RS14230at 2977.774 kb on + strand, within BWI76_RS14230at 2977.774 kb on + strand, within BWI76_RS14230at 2977.818 kb on - strand, within BWI76_RS14230at 2977.994 kb on + strand, within BWI76_RS14230

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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2,975,969 + BWI76_RS14215 0.39 -2.3
2,975,970 - BWI76_RS14215 0.39 -2.1
2,975,998 - BWI76_RS14215 0.49 -2.1
2,976,025 - BWI76_RS14215 0.59 +1.9
2,976,097 + BWI76_RS14215 0.84 +0.5
2,976,097 + BWI76_RS14215 0.84 -0.1
2,976,110 + BWI76_RS14215 0.89 +1.0
2,976,123 + +0.3
2,976,133 - -1.2
2,976,672 + BWI76_RS14225 0.17 +0.9
2,976,680 - BWI76_RS14225 0.18 +1.7
2,977,381 + BWI76_RS14230 0.15 +0.5
2,977,774 + BWI76_RS14230 0.55 +0.5
2,977,774 + BWI76_RS14230 0.55 +1.9
2,977,818 - BWI76_RS14230 0.59 +0.4
2,977,994 + BWI76_RS14230 0.77 -0.3

Or see this region's nucleotide sequence