Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS12440 and BWI76_RS12445 overlap by 10 nucleotides BWI76_RS12445 and BWI76_RS12450 are separated by 167 nucleotides BWI76_RS12450 and BWI76_RS12455 are separated by 51 nucleotides
BWI76_RS12440: BWI76_RS12440 - MFS transporter, at 2,600,137 to 2,601,528
_RS12440
BWI76_RS12445: BWI76_RS12445 - phage shock protein operon transcriptional activator, at 2,601,519 to 2,602,493
_RS12445
BWI76_RS12450: BWI76_RS12450 - phage shock protein PspA, at 2,602,661 to 2,603,329
_RS12450
BWI76_RS12455: BWI76_RS12455 - envelope stress response membrane protein PspB, at 2,603,381 to 2,603,605
_RS12455
Position (kb)
2601
2602
2603 Strain fitness (log2 ratio)
-2
-1
0
1 at 2600.564 kb on + strand, within BWI76_RS12440 at 2600.739 kb on - strand, within BWI76_RS12440 at 2600.821 kb on + strand, within BWI76_RS12440 at 2600.980 kb on - strand, within BWI76_RS12440 at 2601.066 kb on - strand, within BWI76_RS12440 at 2601.192 kb on + strand, within BWI76_RS12440 at 2601.304 kb on - strand, within BWI76_RS12440 at 2601.352 kb on - strand, within BWI76_RS12440 at 2601.411 kb on + strand at 2601.442 kb on - strand at 2601.473 kb on + strand at 2601.655 kb on - strand, within BWI76_RS12445 at 2601.837 kb on + strand, within BWI76_RS12445 at 2601.993 kb on + strand, within BWI76_RS12445 at 2602.265 kb on + strand, within BWI76_RS12445 at 2602.423 kb on + strand at 2602.826 kb on + strand, within BWI76_RS12450 at 2603.123 kb on + strand, within BWI76_RS12450
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 2,600,564 + BWI76_RS12440 0.31 -1.5 2,600,739 - BWI76_RS12440 0.43 -2.0 2,600,821 + BWI76_RS12440 0.49 -2.5 2,600,980 - BWI76_RS12440 0.61 -0.2 2,601,066 - BWI76_RS12440 0.67 +0.7 2,601,192 + BWI76_RS12440 0.76 +0.0 2,601,304 - BWI76_RS12440 0.84 +1.3 2,601,352 - BWI76_RS12440 0.87 -0.7 2,601,411 + -0.1 2,601,442 - -0.8 2,601,473 + +0.5 2,601,655 - BWI76_RS12445 0.14 -1.0 2,601,837 + BWI76_RS12445 0.33 -1.3 2,601,993 + BWI76_RS12445 0.49 -0.6 2,602,265 + BWI76_RS12445 0.77 +0.3 2,602,423 + -0.6 2,602,826 + BWI76_RS12450 0.25 +0.2 2,603,123 + BWI76_RS12450 0.69 +1.1
Or see this region's nucleotide sequence