Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06565

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06555 and BWI76_RS06560 are separated by 201 nucleotidesBWI76_RS06560 and BWI76_RS06565 are separated by 66 nucleotidesBWI76_RS06565 and BWI76_RS06570 are separated by 126 nucleotidesBWI76_RS06570 and BWI76_RS06575 are separated by 47 nucleotides BWI76_RS06555: BWI76_RS06555 - thioesterase superfamily protein, at 1,378,249 to 1,378,650 _RS06555 BWI76_RS06560: BWI76_RS06560 - 7-cyano-7-deazaguanine synthase QueC, at 1,378,852 to 1,379,547 _RS06560 BWI76_RS06565: BWI76_RS06565 - putative periplasmic solute-binding protein, at 1,379,614 to 1,381,314 _RS06565 BWI76_RS06570: BWI76_RS06570 - thiamin pyrimidine pyrophosphate hydrolase, at 1,381,441 to 1,382,259 _RS06570 BWI76_RS06575: BWI76_RS06575 - cysteine synthase, at 1,382,307 to 1,383,359 _RS06575 Position (kb) 1379 1380 1381 1382Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1378.745 kb on + strandat 1378.987 kb on + strand, within BWI76_RS06560at 1378.992 kb on + strand, within BWI76_RS06560at 1379.119 kb on + strand, within BWI76_RS06560at 1379.156 kb on - strand, within BWI76_RS06560at 1379.766 kb on - strandat 1379.929 kb on - strand, within BWI76_RS06565at 1380.101 kb on - strand, within BWI76_RS06565at 1380.215 kb on - strand, within BWI76_RS06565at 1380.284 kb on - strand, within BWI76_RS06565at 1380.416 kb on - strand, within BWI76_RS06565at 1380.560 kb on - strand, within BWI76_RS06565at 1380.610 kb on + strand, within BWI76_RS06565at 1380.742 kb on + strand, within BWI76_RS06565at 1380.755 kb on - strand, within BWI76_RS06565at 1380.799 kb on + strand, within BWI76_RS06565at 1380.939 kb on - strand, within BWI76_RS06565at 1381.139 kb on + strand, within BWI76_RS06565at 1381.195 kb on + strandat 1381.317 kb on - strandat 1381.327 kb on - strandat 1381.672 kb on - strand, within BWI76_RS06570at 1382.023 kb on + strand, within BWI76_RS06570

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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1,378,745 + +2.2
1,378,987 + BWI76_RS06560 0.19 +1.0
1,378,992 + BWI76_RS06560 0.20 +1.4
1,379,119 + BWI76_RS06560 0.38 +1.3
1,379,156 - BWI76_RS06560 0.44 -0.8
1,379,766 - -0.5
1,379,929 - BWI76_RS06565 0.19 +0.1
1,380,101 - BWI76_RS06565 0.29 -0.1
1,380,215 - BWI76_RS06565 0.35 +0.3
1,380,284 - BWI76_RS06565 0.39 -2.6
1,380,416 - BWI76_RS06565 0.47 -2.5
1,380,560 - BWI76_RS06565 0.56 -0.9
1,380,610 + BWI76_RS06565 0.59 +1.3
1,380,742 + BWI76_RS06565 0.66 +2.0
1,380,755 - BWI76_RS06565 0.67 -0.3
1,380,799 + BWI76_RS06565 0.70 -1.1
1,380,939 - BWI76_RS06565 0.78 -2.8
1,381,139 + BWI76_RS06565 0.90 +0.2
1,381,195 + +1.1
1,381,317 - +0.4
1,381,327 - -2.0
1,381,672 - BWI76_RS06570 0.28 +1.1
1,382,023 + BWI76_RS06570 0.71 +0.4

Or see this region's nucleotide sequence