Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_11740

Experiment: LB 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_11730 and AO356_11735 are separated by 206 nucleotidesAO356_11735 and AO356_11740 are separated by 1 nucleotidesAO356_11740 and AO356_11745 are separated by 327 nucleotidesAO356_11745 and AO356_11750 overlap by 8 nucleotides AO356_11730: AO356_11730 - bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase, at 2,656,114 to 2,657,481 _11730 AO356_11735: AO356_11735 - XRE family transcriptional regulator, at 2,657,688 to 2,658,464 _11735 AO356_11740: AO356_11740 - glucosamine--fructose-6-phosphate aminotransferase, at 2,658,466 to 2,660,298 _11740 AO356_11745: AO356_11745 - hypothetical protein, at 2,660,626 to 2,661,084 _11745 AO356_11750: AO356_11750 - toxin HipA, at 2,661,077 to 2,662,333 _11750 Position (kb) 2658 2659 2660 2661Strain fitness (log2 ratio) -2 -1 0 1at 2657.479 kb on + strandat 2657.479 kb on + strandat 2657.528 kb on + strandat 2657.528 kb on + strandat 2657.528 kb on + strandat 2657.529 kb on - strandat 2657.529 kb on - strandat 2657.529 kb on - strandat 2657.529 kb on - strandat 2657.535 kb on + strandat 2657.535 kb on + strandat 2657.535 kb on + strandat 2657.536 kb on - strandat 2657.544 kb on - strandat 2657.544 kb on - strandat 2657.544 kb on - strandat 2657.702 kb on + strandat 2657.702 kb on + strandat 2657.798 kb on + strand, within AO356_11735at 2657.916 kb on + strand, within AO356_11735at 2657.916 kb on + strand, within AO356_11735at 2658.230 kb on + strand, within AO356_11735at 2658.394 kb on + strandat 2660.333 kb on + strandat 2660.333 kb on + strandat 2660.333 kb on + strandat 2660.333 kb on + strandat 2660.333 kb on + strandat 2660.333 kb on + strandat 2660.333 kb on + strandat 2660.333 kb on + strandat 2660.334 kb on - strandat 2660.334 kb on - strandat 2660.334 kb on - strandat 2660.334 kb on - strandat 2660.334 kb on - strandat 2660.334 kb on - strandat 2660.334 kb on - strandat 2660.334 kb on - strandat 2660.334 kb on - strandat 2660.334 kb on - strandat 2660.334 kb on - strandat 2660.334 kb on - strandat 2660.334 kb on - strandat 2660.337 kb on + strandat 2660.337 kb on + strandat 2660.337 kb on + strandat 2660.338 kb on - strandat 2660.338 kb on - strandat 2660.338 kb on - strandat 2660.338 kb on - strandat 2660.356 kb on + strandat 2660.357 kb on - strandat 2660.366 kb on - strandat 2660.399 kb on + strandat 2660.400 kb on - strandat 2660.416 kb on + strandat 2660.416 kb on + strandat 2660.416 kb on + strandat 2660.417 kb on - strandat 2660.417 kb on - strandat 2660.417 kb on - strandat 2660.813 kb on - strand, within AO356_11745at 2660.813 kb on - strand, within AO356_11745at 2661.065 kb on + strandat 2661.065 kb on + strandat 2661.098 kb on + strandat 2661.172 kb on + strandat 2661.173 kb on - strandat 2661.173 kb on - strandat 2661.248 kb on + strand, within AO356_11750at 2661.249 kb on - strand, within AO356_11750at 2661.292 kb on - strand, within AO356_11750

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C
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2,657,479 + +0.5
2,657,479 + -0.0
2,657,528 + -0.5
2,657,528 + +0.2
2,657,528 + -0.5
2,657,529 - +0.2
2,657,529 - +0.7
2,657,529 - +0.4
2,657,529 - +0.3
2,657,535 + +0.0
2,657,535 + +0.1
2,657,535 + +0.1
2,657,536 - +0.0
2,657,544 - +0.5
2,657,544 - -0.0
2,657,544 - +1.0
2,657,702 + +0.2
2,657,702 + -1.1
2,657,798 + AO356_11735 0.14 +1.0
2,657,916 + AO356_11735 0.29 -0.9
2,657,916 + AO356_11735 0.29 +0.3
2,658,230 + AO356_11735 0.70 +0.9
2,658,394 + +0.4
2,660,333 + -0.1
2,660,333 + +0.6
2,660,333 + -0.2
2,660,333 + +1.2
2,660,333 + -0.8
2,660,333 + +0.7
2,660,333 + +0.4
2,660,333 + -0.5
2,660,334 - -0.5
2,660,334 - -0.3
2,660,334 - -0.2
2,660,334 - +0.1
2,660,334 - -1.1
2,660,334 - -1.2
2,660,334 - +0.5
2,660,334 - +1.0
2,660,334 - +0.1
2,660,334 - -0.6
2,660,334 - +0.8
2,660,334 - +0.8
2,660,334 - +0.6
2,660,337 + -0.4
2,660,337 + +0.2
2,660,337 + -0.6
2,660,338 - +0.1
2,660,338 - -0.9
2,660,338 - +0.2
2,660,338 - +0.4
2,660,356 + +0.5
2,660,357 - +0.2
2,660,366 - -0.2
2,660,399 + +0.5
2,660,400 - -0.4
2,660,416 + +0.1
2,660,416 + +0.3
2,660,416 + +0.6
2,660,417 - +0.4
2,660,417 - -0.5
2,660,417 - +0.1
2,660,813 - AO356_11745 0.41 -2.2
2,660,813 - AO356_11745 0.41 +1.0
2,661,065 + -0.7
2,661,065 + +0.6
2,661,098 + -0.7
2,661,172 + +1.0
2,661,173 - +0.6
2,661,173 - +0.8
2,661,248 + AO356_11750 0.14 +0.1
2,661,249 - AO356_11750 0.14 -0.0
2,661,292 - AO356_11750 0.17 +0.6

Or see this region's nucleotide sequence