Experiment: LB 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_10045 and AO356_10050 overlap by 4 nucleotides AO356_10050 and AO356_10055 overlap by 4 nucleotides AO356_10055 and AO356_10060 are separated by 68 nucleotides
AO356_10045: AO356_10045 - glucose-1-phosphate thymidylyltransferase, at 2,267,509 to 2,268,384
_10045
AO356_10050: AO356_10050 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 2,268,381 to 2,268,926
_10050
AO356_10055: AO356_10055 - dTDP-4-dehydrorhamnose reductase, at 2,268,923 to 2,269,807
_10055
AO356_10060: AO356_10060 - ATPase, at 2,269,876 to 2,271,684
_10060
Position (kb)
2268
2269
2270 Strain fitness (log2 ratio)
-2
-1
0
1 at 2269.813 kb on + strand at 2269.813 kb on + strand at 2269.819 kb on + strand at 2269.820 kb on - strand at 2269.820 kb on - strand at 2269.820 kb on - strand at 2269.837 kb on + strand at 2269.837 kb on + strand at 2269.837 kb on + strand at 2269.837 kb on + strand at 2269.837 kb on + strand at 2269.837 kb on + strand at 2269.838 kb on - strand at 2269.838 kb on - strand at 2269.838 kb on - strand at 2269.838 kb on - strand at 2269.838 kb on - strand at 2269.843 kb on + strand at 2269.843 kb on + strand at 2269.843 kb on + strand at 2269.843 kb on + strand at 2269.844 kb on - strand at 2269.846 kb on + strand at 2269.846 kb on + strand at 2269.846 kb on + strand at 2269.846 kb on + strand at 2269.846 kb on + strand at 2269.846 kb on + strand at 2269.847 kb on - strand at 2269.847 kb on - strand at 2269.847 kb on - strand at 2269.847 kb on - strand at 2269.847 kb on - strand at 2269.847 kb on - strand at 2269.847 kb on - strand at 2269.847 kb on - strand at 2269.847 kb on - strand at 2269.847 kb on - strand at 2269.978 kb on + strand at 2269.979 kb on - strand at 2270.026 kb on + strand at 2270.026 kb on + strand at 2270.026 kb on + strand at 2270.026 kb on + strand at 2270.026 kb on + strand at 2270.026 kb on + strand at 2270.027 kb on - strand at 2270.027 kb on - strand at 2270.027 kb on - strand at 2270.027 kb on - strand at 2270.060 kb on - strand, within AO356_10060 at 2270.060 kb on - strand, within AO356_10060 at 2270.060 kb on - strand, within AO356_10060 at 2270.060 kb on - strand, within AO356_10060 at 2270.197 kb on + strand, within AO356_10060 at 2270.197 kb on + strand, within AO356_10060 at 2270.197 kb on + strand, within AO356_10060 at 2270.197 kb on + strand, within AO356_10060 at 2270.197 kb on + strand, within AO356_10060 at 2270.197 kb on + strand, within AO356_10060 at 2270.198 kb on - strand, within AO356_10060 at 2270.198 kb on - strand, within AO356_10060 at 2270.287 kb on + strand, within AO356_10060 at 2270.288 kb on - strand, within AO356_10060 at 2270.359 kb on + strand, within AO356_10060 at 2270.359 kb on + strand, within AO356_10060 at 2270.359 kb on + strand, within AO356_10060 at 2270.360 kb on - strand, within AO356_10060 at 2270.360 kb on - strand, within AO356_10060 at 2270.360 kb on - strand, within AO356_10060 at 2270.576 kb on + strand, within AO356_10060 at 2270.585 kb on - strand, within AO356_10060 at 2270.794 kb on + strand, within AO356_10060 at 2270.794 kb on + strand, within AO356_10060 at 2270.795 kb on - strand, within AO356_10060
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C remove 2,269,813 + -0.1 2,269,813 + +0.1 2,269,819 + +0.1 2,269,820 - +0.5 2,269,820 - +0.4 2,269,820 - +1.2 2,269,837 + +0.4 2,269,837 + +1.2 2,269,837 + -0.1 2,269,837 + -0.1 2,269,837 + -1.8 2,269,837 + -1.5 2,269,838 - +1.5 2,269,838 - -0.2 2,269,838 - +0.2 2,269,838 - +0.4 2,269,838 - -1.7 2,269,843 + +0.1 2,269,843 + -0.1 2,269,843 + +0.6 2,269,843 + +0.3 2,269,844 - +0.1 2,269,846 + -0.9 2,269,846 + +0.2 2,269,846 + +0.1 2,269,846 + +0.3 2,269,846 + -0.9 2,269,846 + -0.4 2,269,847 - +0.6 2,269,847 - +0.6 2,269,847 - -0.5 2,269,847 - -0.6 2,269,847 - -0.2 2,269,847 - -0.6 2,269,847 - -1.3 2,269,847 - +0.8 2,269,847 - +0.3 2,269,847 - -1.4 2,269,978 + +0.9 2,269,979 - -0.5 2,270,026 + +0.0 2,270,026 + -1.5 2,270,026 + +0.7 2,270,026 + +0.6 2,270,026 + +0.6 2,270,026 + +0.3 2,270,027 - +0.9 2,270,027 - +0.2 2,270,027 - -0.6 2,270,027 - +1.2 2,270,060 - AO356_10060 0.10 +1.2 2,270,060 - AO356_10060 0.10 -0.1 2,270,060 - AO356_10060 0.10 +0.5 2,270,060 - AO356_10060 0.10 +0.7 2,270,197 + AO356_10060 0.18 +0.4 2,270,197 + AO356_10060 0.18 +0.3 2,270,197 + AO356_10060 0.18 +0.3 2,270,197 + AO356_10060 0.18 +0.1 2,270,197 + AO356_10060 0.18 +0.7 2,270,197 + AO356_10060 0.18 +0.5 2,270,198 - AO356_10060 0.18 -1.1 2,270,198 - AO356_10060 0.18 -0.0 2,270,287 + AO356_10060 0.23 -0.4 2,270,288 - AO356_10060 0.23 +0.3 2,270,359 + AO356_10060 0.27 +0.4 2,270,359 + AO356_10060 0.27 -0.7 2,270,359 + AO356_10060 0.27 +0.2 2,270,360 - AO356_10060 0.27 +1.2 2,270,360 - AO356_10060 0.27 +0.5 2,270,360 - AO356_10060 0.27 +1.2 2,270,576 + AO356_10060 0.39 -0.4 2,270,585 - AO356_10060 0.39 -0.4 2,270,794 + AO356_10060 0.51 +0.2 2,270,794 + AO356_10060 0.51 +0.6 2,270,795 - AO356_10060 0.51 -0.3
Or see this region's nucleotide sequence