Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_10050

Experiment: LB 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_10040 and AO356_10045 overlap by 4 nucleotidesAO356_10045 and AO356_10050 overlap by 4 nucleotidesAO356_10050 and AO356_10055 overlap by 4 nucleotidesAO356_10055 and AO356_10060 are separated by 68 nucleotides AO356_10040: AO356_10040 - dTDP-glucose 4,6-dehydratase, at 2,266,430 to 2,267,512 _10040 AO356_10045: AO356_10045 - glucose-1-phosphate thymidylyltransferase, at 2,267,509 to 2,268,384 _10045 AO356_10050: AO356_10050 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 2,268,381 to 2,268,926 _10050 AO356_10055: AO356_10055 - dTDP-4-dehydrorhamnose reductase, at 2,268,923 to 2,269,807 _10055 AO356_10060: AO356_10060 - ATPase, at 2,269,876 to 2,271,684 _10060 Position (kb) 2268 2269Strain fitness (log2 ratio) -2 -1 0 1at 2267.462 kb on + strandat 2267.462 kb on + strandat 2267.463 kb on - strandat 2267.463 kb on - strandat 2267.463 kb on - strandat 2269.813 kb on + strandat 2269.813 kb on + strandat 2269.819 kb on + strandat 2269.820 kb on - strandat 2269.820 kb on - strandat 2269.820 kb on - strandat 2269.837 kb on + strandat 2269.837 kb on + strandat 2269.837 kb on + strandat 2269.837 kb on + strandat 2269.837 kb on + strandat 2269.837 kb on + strandat 2269.838 kb on - strandat 2269.838 kb on - strandat 2269.838 kb on - strandat 2269.838 kb on - strandat 2269.838 kb on - strandat 2269.843 kb on + strandat 2269.843 kb on + strandat 2269.843 kb on + strandat 2269.843 kb on + strandat 2269.844 kb on - strandat 2269.846 kb on + strandat 2269.846 kb on + strandat 2269.846 kb on + strandat 2269.846 kb on + strandat 2269.846 kb on + strandat 2269.846 kb on + strandat 2269.847 kb on - strandat 2269.847 kb on - strandat 2269.847 kb on - strandat 2269.847 kb on - strandat 2269.847 kb on - strandat 2269.847 kb on - strandat 2269.847 kb on - strandat 2269.847 kb on - strandat 2269.847 kb on - strandat 2269.847 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C
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2,267,462 + +0.9
2,267,462 + +0.3
2,267,463 - -0.8
2,267,463 - +0.6
2,267,463 - -0.2
2,269,813 + -0.1
2,269,813 + +0.1
2,269,819 + +0.1
2,269,820 - +0.5
2,269,820 - +0.4
2,269,820 - +1.2
2,269,837 + +0.4
2,269,837 + +1.2
2,269,837 + -0.1
2,269,837 + -0.1
2,269,837 + -1.8
2,269,837 + -1.5
2,269,838 - +1.5
2,269,838 - -0.2
2,269,838 - +0.2
2,269,838 - +0.4
2,269,838 - -1.7
2,269,843 + +0.1
2,269,843 + -0.1
2,269,843 + +0.6
2,269,843 + +0.3
2,269,844 - +0.1
2,269,846 + -0.9
2,269,846 + +0.2
2,269,846 + +0.1
2,269,846 + +0.3
2,269,846 + -0.9
2,269,846 + -0.4
2,269,847 - +0.6
2,269,847 - +0.6
2,269,847 - -0.5
2,269,847 - -0.6
2,269,847 - -0.2
2,269,847 - -0.6
2,269,847 - -1.3
2,269,847 - +0.8
2,269,847 - +0.3
2,269,847 - -1.4

Or see this region's nucleotide sequence