Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3763 and Rru_A3764 overlap by 4 nucleotides Rru_A3764 and Rru_A3765 are separated by 23 nucleotides Rru_A3765 and Rru_A3766 are separated by 94 nucleotides Rru_A3766 and Rru_A3767 are separated by 121 nucleotides Rru_A3767 and Rru_A3768 are separated by 61 nucleotides
Rru_A3763: Rru_A3763 - Peptidase M22, glycoprotease (NCBI), at 4,313,859 to 4,314,557
_A3763
Rru_A3764: Rru_A3764 - GCN5-related N-acetyltransferase (NCBI), at 4,314,554 to 4,315,063
_A3764
Rru_A3765: Rru_A3765 - hypothetical protein (NCBI), at 4,315,087 to 4,315,344
_A3765
Rru_A3766: Rru_A3766 - Transcriptional Regulator, MucR family (NCBI), at 4,315,439 to 4,315,861
_A3766
Rru_A3767: Rru_A3767 - Ferric uptake regulator (FUR) family (NCBI), at 4,315,983 to 4,316,405
_A3767
Rru_A3768: Rru_A3768 - hypothetical protein (NCBI), at 4,316,467 to 4,317,267
_A3768
Position (kb)
4315
4316 Strain fitness (log2 ratio)
-2
-1
0
1 at 4315.032 kb on + strand at 4315.033 kb on - strand at 4315.033 kb on - strand at 4315.062 kb on - strand at 4315.363 kb on - strand at 4315.556 kb on + strand, within Rru_A3766 at 4315.556 kb on + strand, within Rru_A3766 at 4315.557 kb on - strand, within Rru_A3766 at 4315.649 kb on + strand, within Rru_A3766 at 4315.649 kb on + strand, within Rru_A3766 at 4315.649 kb on + strand, within Rru_A3766 at 4315.649 kb on + strand, within Rru_A3766 at 4315.649 kb on + strand, within Rru_A3766 at 4315.649 kb on + strand, within Rru_A3766 at 4315.650 kb on - strand, within Rru_A3766 at 4315.650 kb on - strand, within Rru_A3766 at 4315.712 kb on + strand, within Rru_A3766 at 4315.869 kb on + strand at 4315.869 kb on + strand at 4315.870 kb on - strand at 4315.878 kb on + strand at 4315.879 kb on - strand at 4315.942 kb on + strand at 4315.942 kb on + strand at 4315.942 kb on + strand at 4315.945 kb on + strand at 4315.945 kb on + strand at 4315.945 kb on + strand at 4315.945 kb on + strand at 4315.945 kb on + strand at 4315.945 kb on + strand at 4315.945 kb on + strand at 4315.945 kb on + strand at 4315.945 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 4,315,032 + -0.0 4,315,033 - +0.1 4,315,033 - -0.6 4,315,062 - -0.0 4,315,363 - +0.1 4,315,556 + Rru_A3766 0.28 -2.7 4,315,556 + Rru_A3766 0.28 +0.8 4,315,557 - Rru_A3766 0.28 -0.0 4,315,649 + Rru_A3766 0.50 -0.0 4,315,649 + Rru_A3766 0.50 -1.6 4,315,649 + Rru_A3766 0.50 -0.0 4,315,649 + Rru_A3766 0.50 -2.0 4,315,649 + Rru_A3766 0.50 -0.0 4,315,649 + Rru_A3766 0.50 -0.0 4,315,650 - Rru_A3766 0.50 -0.0 4,315,650 - Rru_A3766 0.50 -0.0 4,315,712 + Rru_A3766 0.65 -1.0 4,315,869 + -0.0 4,315,869 + +0.1 4,315,870 - -0.0 4,315,878 + -0.0 4,315,879 - -0.0 4,315,942 + -1.1 4,315,942 + -0.0 4,315,942 + -0.9 4,315,945 + -0.8 4,315,945 + -0.2 4,315,945 + -0.3 4,315,945 + -0.0 4,315,945 + -0.5 4,315,945 + -0.0 4,315,945 + -0.3 4,315,945 + -0.0 4,315,945 + -0.0
Or see this region's nucleotide sequence