Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3744 and Rru_A3745 are separated by 80 nucleotides Rru_A3745 and Rru_A3746 are separated by 146 nucleotides Rru_A3746 and Rru_A3747 are separated by 27 nucleotides Rru_A3747 and Rru_A3748 are separated by 3 nucleotides
Rru_A3744: Rru_A3744 - Predicted signal-transduction protein containing CBS domains (NCBI), at 4,293,572 to 4,294,018
_A3744
Rru_A3745: Rru_A3745 - hypothetical protein (NCBI), at 4,294,099 to 4,294,671
_A3745
Rru_A3746: Rru_A3746 - Ribosomal protein L25 (NCBI), at 4,294,818 to 4,295,450
_A3746
Rru_A3747: Rru_A3747 - Aminoacyl-tRNA hydrolase (NCBI), at 4,295,478 to 4,296,209
_A3747
Rru_A3748: Rru_A3748 - hypothetical protein (NCBI), at 4,296,213 to 4,297,316
_A3748
Position (kb) 4294
4295
4296 Strain fitness (log2 ratio) -1
0
1 at 4293.872 kb on + strand, within Rru_A3744 at 4293.935 kb on + strand, within Rru_A3744 at 4293.993 kb on - strand at 4294.004 kb on + strand at 4294.004 kb on + strand at 4294.005 kb on - strand at 4294.219 kb on + strand, within Rru_A3745 at 4294.219 kb on + strand, within Rru_A3745 at 4294.219 kb on + strand, within Rru_A3745 at 4294.219 kb on + strand, within Rru_A3745 at 4296.401 kb on + strand, within Rru_A3748 at 4296.402 kb on - strand, within Rru_A3748 at 4296.402 kb on - strand, within Rru_A3748 at 4296.402 kb on - strand, within Rru_A3748
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 4,293,872 + Rru_A3744 0.67 -0.0 4,293,935 + Rru_A3744 0.81 -0.0 4,293,993 - -0.4 4,294,004 + -1.0 4,294,004 + -0.0 4,294,005 - +0.2 4,294,219 + Rru_A3745 0.21 -0.0 4,294,219 + Rru_A3745 0.21 -0.8 4,294,219 + Rru_A3745 0.21 +0.2 4,294,219 + Rru_A3745 0.21 -0.0 4,296,401 + Rru_A3748 0.17 -1.0 4,296,402 - Rru_A3748 0.17 -0.0 4,296,402 - Rru_A3748 0.17 -0.0 4,296,402 - Rru_A3748 0.17 -1.0
Or see this region's nucleotide sequence