Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3715

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
4,263,537	+		Rru_A3713	0.46	+0.1
4,263,537	+		Rru_A3713	0.46	+0.9
4,263,538	-		Rru_A3713	0.46	-0.7
4,263,538	-		Rru_A3713	0.46	+0.2
4,263,538	-		Rru_A3713	0.46	+0.3
4,263,538	-		Rru_A3713	0.46	-0.0
4,263,573	+		Rru_A3713	0.52	-1.0
4,263,574	-		Rru_A3713	0.52	-0.2
4,263,574	-		Rru_A3713	0.52	+0.9
4,263,574	-		Rru_A3713	0.52	+0.8
4,263,574	-		Rru_A3713	0.52	-0.4
4,263,578	+		Rru_A3713	0.52	+0.6
4,263,578	+		Rru_A3713	0.52	-0.0
4,263,579	-		Rru_A3713	0.52	-0.0
4,263,579	-		Rru_A3713	0.52	-1.0
4,264,195	+		Rru_A3714	0.34	-0.0
4,264,618	-				-0.0
4,264,677	-				+0.0
4,264,905	-		Rru_A3715	0.18	+0.1
4,265,182	+		Rru_A3715	0.31	+0.2
4,265,182	+		Rru_A3715	0.31	-0.0
4,265,182	+		Rru_A3715	0.31	-1.3
4,265,182	+		Rru_A3715	0.31	+0.1
4,265,182	+		Rru_A3715	0.31	+0.2
4,265,183	-		Rru_A3715	0.31	-0.0
4,265,183	-		Rru_A3715	0.31	+0.1
4,265,183	-		Rru_A3715	0.31	+1.3
4,265,183	-		Rru_A3715	0.31	+0.5
4,265,516	+		Rru_A3715	0.47	-0.0
4,265,516	+		Rru_A3715	0.47	+0.3
4,265,516	+		Rru_A3715	0.47	+0.5
4,265,516	+		Rru_A3715	0.47	+0.5
4,265,517	-		Rru_A3715	0.47	+0.2
4,265,517	-		Rru_A3715	0.47	-1.6
4,265,517	-		Rru_A3715	0.47	-0.0
4,265,517	-		Rru_A3715	0.47	+0.2
4,265,517	-		Rru_A3715	0.47	-0.2
4,265,517	-		Rru_A3715	0.47	+1.7
4,265,570	+		Rru_A3715	0.49	-0.0
4,265,570	+		Rru_A3715	0.49	+0.2
4,265,570	+		Rru_A3715	0.49	+0.5
4,265,571	-		Rru_A3715	0.49	-1.0
4,265,571	-		Rru_A3715	0.49	-0.0
4,265,571	-		Rru_A3715	0.49	-0.0
4,265,726	+		Rru_A3715	0.56	-0.7
4,265,726	+		Rru_A3715	0.56	-0.0
4,265,735	+		Rru_A3715	0.57	+0.5
4,265,735	+		Rru_A3715	0.57	-0.0
4,265,820	-		Rru_A3715	0.61	-0.1
4,265,820	-		Rru_A3715	0.61	+0.7
4,265,839	+		Rru_A3715	0.62	-0.0
4,265,839	+		Rru_A3715	0.62	-0.6
4,265,840	-		Rru_A3715	0.62	-0.0
4,265,840	-		Rru_A3715	0.62	-0.0
4,265,840	-		Rru_A3715	0.62	-0.0
4,265,840	-		Rru_A3715	0.62	+0.2
4,265,918	+		Rru_A3715	0.65	-0.8
4,265,918	+		Rru_A3715	0.65	-0.2
4,265,918	+		Rru_A3715	0.65	-0.6
4,265,919	-		Rru_A3715	0.65	-0.0
4,265,919	-		Rru_A3715	0.65	-0.0
4,266,041	+		Rru_A3715	0.71	-0.0
4,266,041	+		Rru_A3715	0.71	-1.2
4,266,041	+		Rru_A3715	0.71	-0.5
4,266,041	+		Rru_A3715	0.71	-0.0
4,266,042	-		Rru_A3715	0.71	-0.0
4,266,042	-		Rru_A3715	0.71	+0.9
4,266,042	-		Rru_A3715	0.71	-0.5
4,266,042	-		Rru_A3715	0.71	-1.1
4,266,042	-		Rru_A3715	0.71	+0.1
4,266,042	-		Rru_A3715	0.71	+0.1
4,266,431	+		Rru_A3715	0.89	-0.0
4,266,431	+		Rru_A3715	0.89	-0.5
4,266,431	+		Rru_A3715	0.89	-0.0
4,266,431	+		Rru_A3715	0.89	-0.1
4,266,432	-		Rru_A3715	0.89	+1.4
4,266,432	-		Rru_A3715	0.89	+0.4
4,266,432	-		Rru_A3715	0.89	-0.0
4,266,432	-		Rru_A3715	0.89	-0.0
4,266,488	+				-1.0
4,266,623	+				-0.8
4,266,624	-				+0.4
4,266,624	-				-1.0
4,266,626	+				+0.5
4,266,626	+				-1.0
4,266,626	+				-0.5
4,266,627	-				-1.1
4,266,627	-				-0.7
4,266,627	-				-1.0
4,266,627	-				-0.0
4,266,627	-				-1.1
4,266,627	-				-0.0
4,266,627	-				-0.0
4,266,627	-				-1.0
4,266,800	-		Rru_A3716	0.21	+0.9
4,266,800	-		Rru_A3716	0.21	-0.0
4,266,836	-		Rru_A3716	0.26	-0.0
4,267,164	+		Rru_A3716	0.71	+0.4
4,267,322	-				-0.4
4,267,360	+				+0.5
4,267,361	-				+0.2
4,267,361	-				-1.0
4,267,361	-				-0.0
4,267,361	-				-0.0
4,267,362	+				+0.6
4,267,362	+				+0.4
4,267,362	+				+1.2
4,267,362	+				+1.1
4,267,363	-				+0.7
4,267,419	+				-0.0
4,267,419	+				-0.2
4,267,420	-				+0.4
4,267,435	-				+0.3
4,267,503	+		Rru_A3717	0.17	-0.0
4,267,503	+		Rru_A3717	0.17	+0.2
4,267,503	+		Rru_A3717	0.17	-0.0
4,267,504	-		Rru_A3717	0.17	+1.0