Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3693

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3691 and Rru_A3692 are separated by 29 nucleotidesRru_A3692 and Rru_A3693 overlap by 4 nucleotidesRru_A3693 and Rru_A3694 are separated by 29 nucleotides Rru_A3691: Rru_A3691 - Transport-associated (NCBI), at 4,237,401 to 4,238,036 _A3691 Rru_A3692: Rru_A3692 - Protein of unknown function UPF0102 (NCBI), at 4,238,066 to 4,238,443 _A3692 Rru_A3693: Rru_A3693 - Protein of unknown function UPF0011 (NCBI), at 4,238,440 to 4,239,363 _A3693 Rru_A3694: Rru_A3694 - hypothetical protein (NCBI), at 4,239,393 to 4,240,619 _A3694 Position (kb) 4238 4239 4240Strain fitness (log2 ratio) -2 -1 0 1 2at 4237.471 kb on + strand, within Rru_A3691at 4237.472 kb on - strand, within Rru_A3691at 4237.552 kb on + strand, within Rru_A3691at 4237.552 kb on + strand, within Rru_A3691at 4237.552 kb on + strand, within Rru_A3691at 4237.552 kb on + strand, within Rru_A3691at 4237.553 kb on - strand, within Rru_A3691at 4237.771 kb on - strand, within Rru_A3691at 4237.771 kb on - strand, within Rru_A3691at 4237.778 kb on + strand, within Rru_A3691at 4237.778 kb on + strand, within Rru_A3691at 4237.779 kb on - strand, within Rru_A3691at 4237.779 kb on - strand, within Rru_A3691at 4237.779 kb on - strand, within Rru_A3691at 4237.780 kb on + strand, within Rru_A3691at 4237.780 kb on + strand, within Rru_A3691at 4237.780 kb on + strand, within Rru_A3691at 4237.780 kb on + strand, within Rru_A3691at 4237.780 kb on + strand, within Rru_A3691at 4237.781 kb on - strand, within Rru_A3691at 4237.781 kb on - strand, within Rru_A3691at 4237.781 kb on - strand, within Rru_A3691at 4237.781 kb on - strand, within Rru_A3691at 4238.067 kb on + strandat 4238.067 kb on + strandat 4238.067 kb on + strandat 4238.068 kb on - strandat 4238.302 kb on + strand, within Rru_A3692at 4238.302 kb on + strand, within Rru_A3692at 4238.303 kb on - strand, within Rru_A3692at 4238.303 kb on - strand, within Rru_A3692at 4238.384 kb on + strand, within Rru_A3692at 4238.384 kb on + strand, within Rru_A3692at 4238.384 kb on + strand, within Rru_A3692at 4238.385 kb on - strand, within Rru_A3692at 4238.385 kb on - strand, within Rru_A3692at 4238.385 kb on - strand, within Rru_A3692at 4238.706 kb on + strand, within Rru_A3693at 4238.707 kb on - strand, within Rru_A3693at 4238.725 kb on + strand, within Rru_A3693at 4239.133 kb on - strand, within Rru_A3693at 4239.333 kb on + strandat 4239.333 kb on + strandat 4239.333 kb on + strandat 4239.334 kb on - strandat 4239.334 kb on - strandat 4239.349 kb on + strandat 4239.349 kb on + strandat 4239.507 kb on + strandat 4239.507 kb on + strandat 4239.507 kb on + strandat 4239.508 kb on - strandat 4239.508 kb on - strandat 4239.721 kb on - strand, within Rru_A3694at 4240.080 kb on + strand, within Rru_A3694at 4240.083 kb on + strand, within Rru_A3694at 4240.083 kb on + strand, within Rru_A3694at 4240.350 kb on + strand, within Rru_A3694at 4240.362 kb on + strand, within Rru_A3694at 4240.362 kb on + strand, within Rru_A3694at 4240.362 kb on + strand, within Rru_A3694at 4240.363 kb on - strand, within Rru_A3694at 4240.363 kb on - strand, within Rru_A3694

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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4,237,471 + Rru_A3691 0.11 -0.7
4,237,472 - Rru_A3691 0.11 -0.0
4,237,552 + Rru_A3691 0.24 +0.2
4,237,552 + Rru_A3691 0.24 -0.0
4,237,552 + Rru_A3691 0.24 -0.0
4,237,552 + Rru_A3691 0.24 -0.0
4,237,553 - Rru_A3691 0.24 -0.0
4,237,771 - Rru_A3691 0.58 +0.5
4,237,771 - Rru_A3691 0.58 -0.1
4,237,778 + Rru_A3691 0.59 +1.3
4,237,778 + Rru_A3691 0.59 -0.0
4,237,779 - Rru_A3691 0.59 +0.4
4,237,779 - Rru_A3691 0.59 -0.0
4,237,779 - Rru_A3691 0.59 -0.4
4,237,780 + Rru_A3691 0.60 -0.0
4,237,780 + Rru_A3691 0.60 +0.8
4,237,780 + Rru_A3691 0.60 -0.0
4,237,780 + Rru_A3691 0.60 -0.0
4,237,780 + Rru_A3691 0.60 -0.0
4,237,781 - Rru_A3691 0.60 -0.0
4,237,781 - Rru_A3691 0.60 +0.7
4,237,781 - Rru_A3691 0.60 -0.0
4,237,781 - Rru_A3691 0.60 -0.6
4,238,067 + -1.2
4,238,067 + -0.0
4,238,067 + +0.9
4,238,068 - +1.0
4,238,302 + Rru_A3692 0.62 +0.2
4,238,302 + Rru_A3692 0.62 +1.0
4,238,303 - Rru_A3692 0.63 -0.0
4,238,303 - Rru_A3692 0.63 +0.4
4,238,384 + Rru_A3692 0.84 +0.6
4,238,384 + Rru_A3692 0.84 -0.0
4,238,384 + Rru_A3692 0.84 -0.0
4,238,385 - Rru_A3692 0.84 -0.0
4,238,385 - Rru_A3692 0.84 +0.2
4,238,385 - Rru_A3692 0.84 +1.8
4,238,706 + Rru_A3693 0.29 -0.0
4,238,707 - Rru_A3693 0.29 -2.2
4,238,725 + Rru_A3693 0.31 -1.3
4,239,133 - Rru_A3693 0.75 -1.0
4,239,333 + -1.6
4,239,333 + -0.0
4,239,333 + -0.0
4,239,334 - -0.0
4,239,334 - -1.2
4,239,349 + -0.4
4,239,349 + -0.0
4,239,507 + -1.0
4,239,507 + -2.3
4,239,507 + -0.0
4,239,508 - -0.0
4,239,508 - -0.0
4,239,721 - Rru_A3694 0.27 -0.0
4,240,080 + Rru_A3694 0.56 -0.0
4,240,083 + Rru_A3694 0.56 -0.0
4,240,083 + Rru_A3694 0.56 -0.0
4,240,350 + Rru_A3694 0.78 -0.0
4,240,362 + Rru_A3694 0.79 -1.0
4,240,362 + Rru_A3694 0.79 -0.0
4,240,362 + Rru_A3694 0.79 -0.0
4,240,363 - Rru_A3694 0.79 -0.0
4,240,363 - Rru_A3694 0.79 -0.0

Or see this region's nucleotide sequence