Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3661 and Rru_A3662 are separated by 20 nucleotides Rru_A3662 and Rru_A3663 are separated by 4 nucleotides
Rru_A3661: Rru_A3661 - Major facilitator superfamily MFS_1 (NCBI), at 4,203,246 to 4,204,526
_A3661
Rru_A3662: Rru_A3662 - hypothetical protein (NCBI), at 4,204,547 to 4,204,906
_A3662
Rru_A3663: Rru_A3663 - NAD-glutamate dehydrogenase (NCBI), at 4,204,911 to 4,209,788
_A3663
Position (kb) 4204
4205 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4203.758 kb on - strand, within Rru_A3661 at 4203.758 kb on - strand, within Rru_A3661 at 4204.054 kb on + strand, within Rru_A3661 at 4204.055 kb on - strand, within Rru_A3661 at 4204.055 kb on - strand, within Rru_A3661 at 4204.129 kb on + strand, within Rru_A3661 at 4204.129 kb on + strand, within Rru_A3661 at 4204.130 kb on - strand, within Rru_A3661 at 4204.408 kb on + strand at 4204.408 kb on + strand at 4204.408 kb on + strand at 4204.408 kb on + strand at 4204.409 kb on - strand at 4204.409 kb on - strand at 4204.409 kb on - strand at 4204.409 kb on - strand at 4204.409 kb on - strand at 4204.409 kb on - strand at 4204.609 kb on - strand, within Rru_A3662 at 4204.732 kb on + strand, within Rru_A3662 at 4204.732 kb on + strand, within Rru_A3662 at 4204.733 kb on - strand, within Rru_A3662 at 4204.733 kb on - strand, within Rru_A3662 at 4204.734 kb on + strand, within Rru_A3662 at 4204.734 kb on + strand, within Rru_A3662 at 4204.734 kb on + strand, within Rru_A3662 at 4204.734 kb on + strand, within Rru_A3662 at 4204.735 kb on - strand, within Rru_A3662 at 4204.735 kb on - strand, within Rru_A3662 at 4204.735 kb on - strand, within Rru_A3662 at 4204.735 kb on - strand, within Rru_A3662 at 4204.735 kb on - strand, within Rru_A3662 at 4204.914 kb on + strand at 4204.914 kb on + strand at 4204.914 kb on + strand at 4204.915 kb on - strand at 4204.915 kb on - strand at 4205.291 kb on + strand at 4205.642 kb on + strand, within Rru_A3663 at 4205.644 kb on + strand, within Rru_A3663 at 4205.644 kb on + strand, within Rru_A3663 at 4205.644 kb on + strand, within Rru_A3663 at 4205.644 kb on + strand, within Rru_A3663 at 4205.645 kb on - strand, within Rru_A3663 at 4205.645 kb on - strand, within Rru_A3663 at 4205.645 kb on - strand, within Rru_A3663 at 4205.645 kb on - strand, within Rru_A3663 at 4205.645 kb on - strand, within Rru_A3663 at 4205.818 kb on + strand, within Rru_A3663 at 4205.899 kb on + strand, within Rru_A3663 at 4205.900 kb on - strand, within Rru_A3663
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 4,203,758 - Rru_A3661 0.40 -0.0 4,203,758 - Rru_A3661 0.40 +0.8 4,204,054 + Rru_A3661 0.63 -1.0 4,204,055 - Rru_A3661 0.63 -0.0 4,204,055 - Rru_A3661 0.63 +0.8 4,204,129 + Rru_A3661 0.69 +0.9 4,204,129 + Rru_A3661 0.69 -0.0 4,204,130 - Rru_A3661 0.69 +0.6 4,204,408 + -1.0 4,204,408 + -0.0 4,204,408 + +0.5 4,204,408 + +0.3 4,204,409 - +0.8 4,204,409 - -0.0 4,204,409 - +0.5 4,204,409 - -0.0 4,204,409 - +0.3 4,204,409 - -0.0 4,204,609 - Rru_A3662 0.17 +3.1 4,204,732 + Rru_A3662 0.51 -0.0 4,204,732 + Rru_A3662 0.51 -0.0 4,204,733 - Rru_A3662 0.52 -1.0 4,204,733 - Rru_A3662 0.52 +0.4 4,204,734 + Rru_A3662 0.52 +0.6 4,204,734 + Rru_A3662 0.52 -0.4 4,204,734 + Rru_A3662 0.52 +0.3 4,204,734 + Rru_A3662 0.52 -0.0 4,204,735 - Rru_A3662 0.52 -0.0 4,204,735 - Rru_A3662 0.52 +1.8 4,204,735 - Rru_A3662 0.52 -2.0 4,204,735 - Rru_A3662 0.52 +0.8 4,204,735 - Rru_A3662 0.52 +1.2 4,204,914 + -0.0 4,204,914 + +0.2 4,204,914 + -1.6 4,204,915 - -0.0 4,204,915 - +0.1 4,205,291 + +0.1 4,205,642 + Rru_A3663 0.15 -0.0 4,205,644 + Rru_A3663 0.15 +0.2 4,205,644 + Rru_A3663 0.15 -0.0 4,205,644 + Rru_A3663 0.15 +1.0 4,205,644 + Rru_A3663 0.15 +0.7 4,205,645 - Rru_A3663 0.15 -0.5 4,205,645 - Rru_A3663 0.15 -0.0 4,205,645 - Rru_A3663 0.15 -0.0 4,205,645 - Rru_A3663 0.15 +0.2 4,205,645 - Rru_A3663 0.15 -0.1 4,205,818 + Rru_A3663 0.19 +0.6 4,205,899 + Rru_A3663 0.20 +0.4 4,205,900 - Rru_A3663 0.20 +0.5
Or see this region's nucleotide sequence