Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3640 and Rru_A3641 are separated by 30 nucleotides Rru_A3641 and Rru_A3642 are separated by 201 nucleotides Rru_A3642 and Rru_A3643 are separated by 48 nucleotides Rru_A3643 and Rru_A3644 are separated by 128 nucleotides
Rru_A3640: Rru_A3640 - Ham1-like protein (NCBI), at 4,181,442 to 4,182,047
_A3640
Rru_A3641: Rru_A3641 - Ribonuclease PH (NCBI), at 4,182,078 to 4,182,800
_A3641
Rru_A3642: Rru_A3642 - Negative regulator of class I heat shock protein (NCBI), at 4,183,002 to 4,184,060
_A3642
Rru_A3643: Rru_A3643 - GrpE protein (NCBI), at 4,184,109 to 4,184,774
_A3643
Rru_A3644: Rru_A3644 - Uracil-DNA glycosylase superfamily (NCBI), at 4,184,903 to 4,185,502
_A3644
Position (kb) 4183
4184
4185 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4182.079 kb on + strand at 4182.272 kb on - strand, within Rru_A3641 at 4182.272 kb on - strand, within Rru_A3641 at 4182.272 kb on - strand, within Rru_A3641 at 4182.389 kb on - strand, within Rru_A3641 at 4182.614 kb on - strand, within Rru_A3641 at 4182.614 kb on - strand, within Rru_A3641 at 4182.847 kb on + strand at 4182.847 kb on + strand at 4182.848 kb on - strand at 4182.939 kb on + strand at 4182.975 kb on - strand at 4183.084 kb on - strand at 4183.084 kb on - strand at 4183.570 kb on - strand, within Rru_A3642 at 4183.845 kb on - strand, within Rru_A3642 at 4183.845 kb on - strand, within Rru_A3642 at 4184.833 kb on + strand at 4184.833 kb on + strand at 4184.834 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 4,182,079 + -0.0 4,182,272 - Rru_A3641 0.27 +0.5 4,182,272 - Rru_A3641 0.27 +0.2 4,182,272 - Rru_A3641 0.27 -0.3 4,182,389 - Rru_A3641 0.43 -0.0 4,182,614 - Rru_A3641 0.74 -0.0 4,182,614 - Rru_A3641 0.74 -0.0 4,182,847 + -1.0 4,182,847 + +0.2 4,182,848 - +0.2 4,182,939 + -0.0 4,182,975 - -0.0 4,183,084 - -0.0 4,183,084 - -1.6 4,183,570 - Rru_A3642 0.54 -0.0 4,183,845 - Rru_A3642 0.80 -1.0 4,183,845 - Rru_A3642 0.80 -2.8 4,184,833 + -0.0 4,184,833 + -0.0 4,184,834 - +0.2
Or see this region's nucleotide sequence