Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3634 and Rru_A3635 overlap by 4 nucleotides Rru_A3635 and Rru_A3636 are separated by 25 nucleotides Rru_A3636 and Rru_A3637 are separated by 264 nucleotides
Rru_A3634: Rru_A3634 - Protein of unknown function UPF0001 (NCBI), at 4,175,262 to 4,175,990
_A3634
Rru_A3635: Rru_A3635 - hypothetical protein (NCBI), at 4,175,987 to 4,176,490
_A3635
Rru_A3636: Rru_A3636 - hypothetical protein (NCBI), at 4,176,516 to 4,177,910
_A3636
Rru_A3637: Rru_A3637 - GTP cyclohydrolase II (NCBI), at 4,178,175 to 4,179,329
_A3637
Position (kb) 4176
4177
4178 Strain fitness (log2 ratio) -1
0
1 at 4175.684 kb on + strand, within Rru_A3634 at 4176.149 kb on - strand, within Rru_A3635 at 4176.239 kb on - strand, within Rru_A3635 at 4176.239 kb on - strand, within Rru_A3635 at 4176.240 kb on + strand, within Rru_A3635 at 4176.241 kb on - strand, within Rru_A3635 at 4176.514 kb on + strand at 4176.515 kb on - strand at 4176.515 kb on - strand at 4176.568 kb on + strand at 4176.828 kb on - strand, within Rru_A3636 at 4176.828 kb on - strand, within Rru_A3636 at 4176.828 kb on - strand, within Rru_A3636 at 4176.967 kb on + strand, within Rru_A3636 at 4176.967 kb on + strand, within Rru_A3636 at 4177.231 kb on + strand, within Rru_A3636 at 4177.232 kb on - strand, within Rru_A3636 at 4177.379 kb on - strand, within Rru_A3636 at 4177.379 kb on - strand, within Rru_A3636 at 4177.561 kb on + strand, within Rru_A3636 at 4178.100 kb on + strand at 4178.100 kb on + strand at 4178.101 kb on - strand at 4178.163 kb on + strand at 4178.164 kb on - strand at 4178.164 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 4,175,684 + Rru_A3634 0.58 -0.9 4,176,149 - Rru_A3635 0.32 +1.2 4,176,239 - Rru_A3635 0.50 -0.0 4,176,239 - Rru_A3635 0.50 +0.8 4,176,240 + Rru_A3635 0.50 -0.0 4,176,241 - Rru_A3635 0.50 +0.2 4,176,514 + -0.0 4,176,515 - -0.0 4,176,515 - -0.0 4,176,568 + +0.4 4,176,828 - Rru_A3636 0.22 -0.0 4,176,828 - Rru_A3636 0.22 -0.0 4,176,828 - Rru_A3636 0.22 -0.0 4,176,967 + Rru_A3636 0.32 +1.2 4,176,967 + Rru_A3636 0.32 +0.6 4,177,231 + Rru_A3636 0.51 +0.5 4,177,232 - Rru_A3636 0.51 +0.6 4,177,379 - Rru_A3636 0.62 -0.0 4,177,379 - Rru_A3636 0.62 -0.0 4,177,561 + Rru_A3636 0.75 -0.0 4,178,100 + -0.0 4,178,100 + -1.0 4,178,101 - -0.0 4,178,163 + +0.3 4,178,164 - +0.5 4,178,164 - -0.0
Or see this region's nucleotide sequence