Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3587 and Rru_A3588 are separated by 464 nucleotides Rru_A3588 and Rru_A3589 are separated by 80 nucleotides
Rru_A3587: Rru_A3587 - hypothetical protein (NCBI), at 4,130,407 to 4,131,249
_A3587
Rru_A3588: Rru_A3588 - Cytochrome B561 (NCBI), at 4,131,714 to 4,132,463
_A3588
Rru_A3589: Rru_A3589 - Mg chelatase-related protein (NCBI), at 4,132,544 to 4,134,064
_A3589
Position (kb) 4131
4132
4133 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4131.284 kb on + strand at 4131.284 kb on + strand at 4131.284 kb on + strand at 4131.284 kb on + strand at 4131.285 kb on - strand at 4131.288 kb on + strand at 4131.289 kb on - strand at 4131.560 kb on - strand at 4131.710 kb on + strand at 4131.710 kb on + strand at 4131.711 kb on - strand at 4131.711 kb on - strand at 4131.905 kb on + strand, within Rru_A3588 at 4131.905 kb on + strand, within Rru_A3588 at 4131.905 kb on + strand, within Rru_A3588 at 4131.905 kb on + strand, within Rru_A3588 at 4131.906 kb on - strand, within Rru_A3588 at 4131.906 kb on - strand, within Rru_A3588 at 4131.942 kb on + strand, within Rru_A3588 at 4131.942 kb on + strand, within Rru_A3588 at 4132.023 kb on + strand, within Rru_A3588 at 4132.024 kb on - strand, within Rru_A3588 at 4132.024 kb on - strand, within Rru_A3588 at 4132.220 kb on + strand, within Rru_A3588 at 4132.220 kb on + strand, within Rru_A3588 at 4132.220 kb on + strand, within Rru_A3588 at 4132.220 kb on + strand, within Rru_A3588 at 4132.220 kb on + strand, within Rru_A3588 at 4132.220 kb on + strand, within Rru_A3588 at 4132.221 kb on - strand, within Rru_A3588 at 4132.221 kb on - strand, within Rru_A3588 at 4132.221 kb on - strand, within Rru_A3588 at 4132.238 kb on + strand, within Rru_A3588 at 4132.239 kb on - strand, within Rru_A3588 at 4132.239 kb on - strand, within Rru_A3588 at 4132.374 kb on + strand, within Rru_A3588 at 4132.374 kb on + strand, within Rru_A3588 at 4132.374 kb on + strand, within Rru_A3588 at 4132.375 kb on - strand, within Rru_A3588 at 4132.375 kb on - strand, within Rru_A3588 at 4132.375 kb on - strand, within Rru_A3588 at 4132.375 kb on - strand, within Rru_A3588 at 4132.481 kb on - strand at 4132.511 kb on - strand at 4132.535 kb on + strand at 4132.536 kb on - strand at 4132.561 kb on + strand at 4132.851 kb on - strand, within Rru_A3589 at 4133.173 kb on + strand, within Rru_A3589 at 4133.239 kb on - strand, within Rru_A3589
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 4,131,284 + +0.4 4,131,284 + -1.0 4,131,284 + -0.0 4,131,284 + -0.2 4,131,285 - -1.9 4,131,288 + +0.7 4,131,289 - -1.0 4,131,560 - -0.5 4,131,710 + +0.9 4,131,710 + +1.3 4,131,711 - +1.2 4,131,711 - -0.0 4,131,905 + Rru_A3588 0.25 +0.4 4,131,905 + Rru_A3588 0.25 -0.0 4,131,905 + Rru_A3588 0.25 +0.6 4,131,905 + Rru_A3588 0.25 -0.0 4,131,906 - Rru_A3588 0.26 -0.0 4,131,906 - Rru_A3588 0.26 -0.0 4,131,942 + Rru_A3588 0.30 +1.2 4,131,942 + Rru_A3588 0.30 -0.0 4,132,023 + Rru_A3588 0.41 -1.0 4,132,024 - Rru_A3588 0.41 -0.0 4,132,024 - Rru_A3588 0.41 +0.5 4,132,220 + Rru_A3588 0.67 +1.6 4,132,220 + Rru_A3588 0.67 -0.7 4,132,220 + Rru_A3588 0.67 +0.4 4,132,220 + Rru_A3588 0.67 +1.2 4,132,220 + Rru_A3588 0.67 +0.9 4,132,220 + Rru_A3588 0.67 +0.8 4,132,221 - Rru_A3588 0.68 +0.9 4,132,221 - Rru_A3588 0.68 +0.8 4,132,221 - Rru_A3588 0.68 +0.5 4,132,238 + Rru_A3588 0.70 +2.0 4,132,239 - Rru_A3588 0.70 -0.0 4,132,239 - Rru_A3588 0.70 +0.1 4,132,374 + Rru_A3588 0.88 +0.8 4,132,374 + Rru_A3588 0.88 -0.0 4,132,374 + Rru_A3588 0.88 -1.0 4,132,375 - Rru_A3588 0.88 -0.0 4,132,375 - Rru_A3588 0.88 -0.0 4,132,375 - Rru_A3588 0.88 -0.5 4,132,375 - Rru_A3588 0.88 +0.9 4,132,481 - +0.6 4,132,511 - +0.2 4,132,535 + -0.0 4,132,536 - +0.6 4,132,561 + +1.1 4,132,851 - Rru_A3589 0.20 +0.9 4,133,173 + Rru_A3589 0.41 +1.6 4,133,239 - Rru_A3589 0.46 +0.8
Or see this region's nucleotide sequence