Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3512

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3511 and Rru_A3512 are separated by 109 nucleotidesRru_A3512 and Rru_A3513 are separated by 26 nucleotides Rru_A3511: Rru_A3511 - Aconitate hydratase 1 (NCBI), at 4,039,803 to 4,042,478 _A3511 Rru_A3512: Rru_A3512 - Glutamine amidotransferase class-I (NCBI), at 4,042,588 to 4,043,313 _A3512 Rru_A3513: Rru_A3513 - chemotaxis sensory transducer (NCBI), at 4,043,340 to 4,045,097 _A3513 Position (kb) 4042 4043 4044Strain fitness (log2 ratio) -1 0 1 2at 4042.553 kb on + strandat 4042.554 kb on - strandat 4042.678 kb on + strand, within Rru_A3512at 4042.679 kb on - strand, within Rru_A3512at 4042.756 kb on + strand, within Rru_A3512at 4042.771 kb on + strand, within Rru_A3512at 4042.772 kb on - strand, within Rru_A3512at 4042.888 kb on + strand, within Rru_A3512at 4042.889 kb on - strand, within Rru_A3512at 4042.889 kb on - strand, within Rru_A3512at 4043.004 kb on + strand, within Rru_A3512at 4043.004 kb on + strand, within Rru_A3512at 4043.326 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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4,042,553 + +0.7
4,042,554 - -0.0
4,042,678 + Rru_A3512 0.12 -1.0
4,042,679 - Rru_A3512 0.13 -1.0
4,042,756 + Rru_A3512 0.23 +0.9
4,042,771 + Rru_A3512 0.25 -0.0
4,042,772 - Rru_A3512 0.25 +2.1
4,042,888 + Rru_A3512 0.41 +0.3
4,042,889 - Rru_A3512 0.41 +0.5
4,042,889 - Rru_A3512 0.41 -0.0
4,043,004 + Rru_A3512 0.57 -0.0
4,043,004 + Rru_A3512 0.57 -0.0
4,043,326 - -0.0

Or see this region's nucleotide sequence