Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3499 and Rru_A3500 are separated by 68 nucleotides Rru_A3500 and Rru_A3501 are separated by 39 nucleotides Rru_A3501 and Rru_A3502 are separated by 264 nucleotides Rru_A3502 and Rru_A3503 are separated by 57 nucleotides
Rru_A3499: Rru_A3499 - hypothetical protein (NCBI), at 4,027,700 to 4,028,227
_A3499
Rru_A3500: Rru_A3500 - Cobalamin (vitamin B12) biosynthesis CbiM protein (NCBI), at 4,028,296 to 4,028,931
_A3500
Rru_A3501: Rru_A3501 - lipoprotein, putative (NCBI), at 4,028,971 to 4,029,768
_A3501
Rru_A3502: Rru_A3502 - hypothetical protein (NCBI), at 4,030,033 to 4,030,488
_A3502
Rru_A3503: Rru_A3503 - Glyoxalase/bleomycin resistance protein/dioxygenase (NCBI), at 4,030,546 to 4,031,010
_A3503
Position (kb) 4028
4029
4030 Strain fitness (log2 ratio) -1
0
1
2 at 4028.050 kb on + strand, within Rru_A3499 at 4028.184 kb on + strand at 4028.236 kb on + strand at 4028.237 kb on - strand at 4028.237 kb on - strand at 4028.925 kb on + strand at 4028.972 kb on + strand at 4028.972 kb on + strand at 4028.973 kb on - strand at 4028.986 kb on - strand at 4028.995 kb on - strand at 4029.102 kb on + strand, within Rru_A3501 at 4029.103 kb on - strand, within Rru_A3501 at 4029.202 kb on + strand, within Rru_A3501 at 4029.203 kb on - strand, within Rru_A3501 at 4029.203 kb on - strand, within Rru_A3501 at 4029.272 kb on + strand, within Rru_A3501 at 4029.272 kb on + strand, within Rru_A3501 at 4029.273 kb on - strand, within Rru_A3501 at 4029.273 kb on - strand, within Rru_A3501 at 4029.374 kb on + strand, within Rru_A3501 at 4029.374 kb on + strand, within Rru_A3501 at 4029.374 kb on + strand, within Rru_A3501 at 4029.374 kb on + strand, within Rru_A3501 at 4029.374 kb on + strand, within Rru_A3501 at 4029.374 kb on + strand, within Rru_A3501 at 4029.375 kb on - strand, within Rru_A3501 at 4029.375 kb on - strand, within Rru_A3501 at 4029.410 kb on + strand, within Rru_A3501 at 4029.736 kb on + strand at 4029.823 kb on + strand at 4029.823 kb on + strand at 4029.823 kb on + strand at 4029.824 kb on - strand at 4029.824 kb on - strand at 4029.825 kb on + strand at 4029.861 kb on + strand at 4029.916 kb on - strand at 4029.954 kb on + strand at 4029.954 kb on + strand at 4029.954 kb on + strand at 4029.954 kb on + strand at 4029.954 kb on + strand at 4029.954 kb on + strand at 4029.955 kb on - strand at 4029.955 kb on - strand at 4029.955 kb on - strand at 4029.955 kb on - strand at 4029.955 kb on - strand at 4030.228 kb on + strand, within Rru_A3502 at 4030.228 kb on + strand, within Rru_A3502 at 4030.705 kb on + strand, within Rru_A3503 at 4030.706 kb on - strand, within Rru_A3503 at 4030.706 kb on - strand, within Rru_A3503 at 4030.715 kb on - strand, within Rru_A3503 at 4030.715 kb on - strand, within Rru_A3503 at 4030.756 kb on + strand, within Rru_A3503 at 4030.757 kb on - strand, within Rru_A3503
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 4,028,050 + Rru_A3499 0.66 -0.0 4,028,184 + -0.0 4,028,236 + -1.6 4,028,237 - +1.1 4,028,237 - +0.5 4,028,925 + -0.0 4,028,972 + -0.0 4,028,972 + -0.0 4,028,973 - +0.5 4,028,986 - -0.4 4,028,995 - -0.1 4,029,102 + Rru_A3501 0.16 +0.5 4,029,103 - Rru_A3501 0.17 +1.8 4,029,202 + Rru_A3501 0.29 +0.2 4,029,203 - Rru_A3501 0.29 -0.0 4,029,203 - Rru_A3501 0.29 -0.0 4,029,272 + Rru_A3501 0.38 +0.3 4,029,272 + Rru_A3501 0.38 -1.0 4,029,273 - Rru_A3501 0.38 -0.0 4,029,273 - Rru_A3501 0.38 -0.0 4,029,374 + Rru_A3501 0.51 -0.0 4,029,374 + Rru_A3501 0.51 -0.4 4,029,374 + Rru_A3501 0.51 +0.2 4,029,374 + Rru_A3501 0.51 +0.8 4,029,374 + Rru_A3501 0.51 -0.0 4,029,374 + Rru_A3501 0.51 -0.5 4,029,375 - Rru_A3501 0.51 -0.9 4,029,375 - Rru_A3501 0.51 -0.0 4,029,410 + Rru_A3501 0.55 +0.6 4,029,736 + -0.6 4,029,823 + +0.4 4,029,823 + +0.2 4,029,823 + +1.1 4,029,824 - +0.7 4,029,824 - +0.4 4,029,825 + -0.5 4,029,861 + +1.0 4,029,916 - -1.0 4,029,954 + -0.0 4,029,954 + -0.0 4,029,954 + +1.0 4,029,954 + -0.5 4,029,954 + -0.0 4,029,954 + -0.0 4,029,955 - -0.0 4,029,955 - -1.3 4,029,955 - -0.0 4,029,955 - -0.0 4,029,955 - -1.0 4,030,228 + Rru_A3502 0.43 -0.0 4,030,228 + Rru_A3502 0.43 -0.0 4,030,705 + Rru_A3503 0.34 +0.3 4,030,706 - Rru_A3503 0.34 -1.6 4,030,706 - Rru_A3503 0.34 -0.0 4,030,715 - Rru_A3503 0.36 -0.0 4,030,715 - Rru_A3503 0.36 +0.4 4,030,756 + Rru_A3503 0.45 -0.0 4,030,757 - Rru_A3503 0.45 -0.0
Or see this region's nucleotide sequence