Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3492 and Rru_A3493 are separated by 286 nucleotides Rru_A3493 and Rru_A3494 are separated by 77 nucleotides Rru_A3494 and Rru_AR0067 are separated by 27 nucleotides Rru_AR0067 and Rru_A3495 are separated by 224 nucleotides Rru_A3495 and Rru_A3496 are separated by 253 nucleotides
Rru_A3492: Rru_A3492 - Periplasmic Sensor Hybrid Histidine Kinase (NCBI), at 4,018,133 to 4,021,258
_A3492
Rru_A3493: Rru_A3493 - Hpt domain protein (NCBI), at 4,021,545 to 4,021,904
_A3493
Rru_A3494: Rru_A3494 - Putative diguanylate phosphodiesterase (EAL domain) with Response Regulator Receiver modulation (NCBI), at 4,021,982 to 4,023,163
_A3494
Rru_AR0067: Rru_AR0067 - tRNA-Leu (NCBI), at 4,023,191 to 4,023,277
_AR0067
Rru_A3495: Rru_A3495 - hypothetical protein (NCBI), at 4,023,502 to 4,023,855
_A3495
Rru_A3496: Rru_A3496 - chemotaxis sensory transducer (NCBI), at 4,024,109 to 4,026,214
_A3496
Position (kb) 4021
4022
4023
4024 Strain fitness (log2 ratio) -1
0
1 at 4021.014 kb on + strand at 4021.015 kb on - strand at 4021.086 kb on + strand at 4021.087 kb on - strand at 4021.087 kb on - strand at 4021.094 kb on + strand at 4021.095 kb on - strand at 4021.143 kb on + strand at 4021.143 kb on + strand at 4021.253 kb on - strand at 4021.320 kb on - strand at 4021.421 kb on - strand at 4021.731 kb on - strand, within Rru_A3493 at 4021.881 kb on + strand at 4021.881 kb on + strand at 4021.881 kb on + strand at 4021.881 kb on + strand at 4021.882 kb on - strand at 4021.882 kb on - strand at 4021.882 kb on - strand at 4021.882 kb on - strand at 4021.882 kb on - strand at 4021.882 kb on - strand at 4021.882 kb on - strand at 4021.882 kb on - strand at 4022.151 kb on + strand, within Rru_A3494 at 4022.151 kb on + strand, within Rru_A3494 at 4022.152 kb on - strand, within Rru_A3494 at 4022.152 kb on - strand, within Rru_A3494 at 4022.152 kb on - strand, within Rru_A3494 at 4022.282 kb on + strand, within Rru_A3494 at 4022.430 kb on - strand, within Rru_A3494 at 4022.575 kb on + strand, within Rru_A3494 at 4022.575 kb on + strand, within Rru_A3494 at 4022.710 kb on + strand, within Rru_A3494 at 4022.710 kb on + strand, within Rru_A3494 at 4022.710 kb on + strand, within Rru_A3494 at 4022.710 kb on + strand, within Rru_A3494 at 4022.711 kb on - strand, within Rru_A3494 at 4022.711 kb on - strand, within Rru_A3494 at 4022.711 kb on - strand, within Rru_A3494 at 4022.853 kb on - strand, within Rru_A3494 at 4023.091 kb on - strand at 4023.095 kb on + strand at 4023.095 kb on + strand at 4023.096 kb on - strand at 4023.161 kb on + strand at 4023.162 kb on - strand at 4023.359 kb on + strand at 4023.360 kb on - strand at 4023.360 kb on - strand at 4023.360 kb on - strand at 4023.360 kb on - strand at 4023.454 kb on + strand at 4023.454 kb on + strand at 4023.454 kb on + strand at 4023.454 kb on + strand at 4023.454 kb on + strand at 4023.455 kb on - strand at 4023.455 kb on - strand at 4023.455 kb on - strand at 4023.688 kb on + strand, within Rru_A3495 at 4023.688 kb on + strand, within Rru_A3495 at 4024.014 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 4,021,014 + -0.3 4,021,015 - +0.5 4,021,086 + -0.0 4,021,087 - +0.8 4,021,087 - -1.0 4,021,094 + -0.0 4,021,095 - -0.0 4,021,143 + -0.0 4,021,143 + +0.2 4,021,253 - -0.0 4,021,320 - -1.0 4,021,421 - -0.0 4,021,731 - Rru_A3493 0.52 -0.0 4,021,881 + -0.0 4,021,881 + -0.0 4,021,881 + +0.7 4,021,881 + +0.4 4,021,882 - +0.2 4,021,882 - +0.6 4,021,882 - +0.6 4,021,882 - +0.8 4,021,882 - +0.1 4,021,882 - +0.9 4,021,882 - -0.1 4,021,882 - -0.2 4,022,151 + Rru_A3494 0.14 +0.4 4,022,151 + Rru_A3494 0.14 -0.0 4,022,152 - Rru_A3494 0.14 -0.0 4,022,152 - Rru_A3494 0.14 +1.3 4,022,152 - Rru_A3494 0.14 +0.8 4,022,282 + Rru_A3494 0.25 +0.4 4,022,430 - Rru_A3494 0.38 -0.0 4,022,575 + Rru_A3494 0.50 -0.0 4,022,575 + Rru_A3494 0.50 -0.0 4,022,710 + Rru_A3494 0.62 +0.4 4,022,710 + Rru_A3494 0.62 +0.3 4,022,710 + Rru_A3494 0.62 -1.0 4,022,710 + Rru_A3494 0.62 +1.7 4,022,711 - Rru_A3494 0.62 -1.6 4,022,711 - Rru_A3494 0.62 -0.0 4,022,711 - Rru_A3494 0.62 -0.0 4,022,853 - Rru_A3494 0.74 +0.9 4,023,091 - -0.0 4,023,095 + -0.3 4,023,095 + +0.0 4,023,096 - +0.7 4,023,161 + -0.0 4,023,162 - -0.9 4,023,359 + +0.3 4,023,360 - -0.0 4,023,360 - -1.0 4,023,360 - -0.3 4,023,360 - -0.0 4,023,454 + -0.0 4,023,454 + +0.5 4,023,454 + -0.0 4,023,454 + +1.2 4,023,454 + +0.3 4,023,455 - -0.6 4,023,455 - -0.0 4,023,455 - +0.2 4,023,688 + Rru_A3495 0.53 -0.0 4,023,688 + Rru_A3495 0.53 +0.8 4,024,014 + +0.1
Or see this region's nucleotide sequence