Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3461

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
3,985,066	+		Rru_A3460	0.56	+0.5
3,985,066	+		Rru_A3460	0.56	+0.3
3,985,066	+		Rru_A3460	0.56	+0.4
3,985,066	+		Rru_A3460	0.56	-0.0
3,985,067	-		Rru_A3460	0.56	+0.7
3,985,096	+		Rru_A3460	0.57	-0.5
3,985,096	+		Rru_A3460	0.57	-0.0
3,985,096	+		Rru_A3460	0.57	+0.1
3,985,096	+		Rru_A3460	0.57	-0.0
3,985,096	+		Rru_A3460	0.57	-0.0
3,985,097	-		Rru_A3460	0.57	+0.5
3,985,097	-		Rru_A3460	0.57	-0.4
3,985,097	-		Rru_A3460	0.57	-0.0
3,985,097	-		Rru_A3460	0.57	+1.0
3,985,097	-		Rru_A3460	0.57	-0.0
3,985,138	+		Rru_A3460	0.59	+0.7
3,985,139	-		Rru_A3460	0.59	-0.0
3,985,139	-		Rru_A3460	0.59	+0.3
3,985,360	+		Rru_A3460	0.71	-0.7
3,985,360	+		Rru_A3460	0.71	-0.0
3,985,361	-		Rru_A3460	0.71	+0.9
3,985,361	-		Rru_A3460	0.71	+0.1
3,985,361	-		Rru_A3460	0.71	+0.6
3,985,361	-		Rru_A3460	0.71	-0.0
3,985,361	-		Rru_A3460	0.71	-0.0
3,985,362	+		Rru_A3460	0.71	+0.1
3,985,362	+		Rru_A3460	0.71	+0.5
3,985,363	-		Rru_A3460	0.71	+1.4
3,985,363	-		Rru_A3460	0.71	-0.0
3,985,507	+		Rru_A3460	0.78	-0.0
3,985,507	+		Rru_A3460	0.78	-0.0
3,985,507	+		Rru_A3460	0.78	-0.8
3,985,507	+		Rru_A3460	0.78	+0.2
3,985,507	+		Rru_A3460	0.78	-0.1
3,985,508	-		Rru_A3460	0.78	-0.0
3,985,508	-		Rru_A3460	0.78	-0.4
3,985,508	-		Rru_A3460	0.78	+0.6
3,985,508	-		Rru_A3460	0.78	+0.4
3,985,534	-		Rru_A3460	0.80	+1.1
3,985,712	+		Rru_A3460	0.89	+1.1
3,985,713	-		Rru_A3460	0.89	-0.8
3,985,720	+		Rru_A3460	0.89	-0.0
3,985,720	+		Rru_A3460	0.89	-0.1
3,985,720	+		Rru_A3460	0.89	-0.0
3,985,721	-		Rru_A3460	0.89	-1.0
3,985,721	-		Rru_A3460	0.89	-0.0
3,985,721	-		Rru_A3460	0.89	-0.0
3,985,721	-		Rru_A3460	0.89	+0.5
3,985,721	-		Rru_A3460	0.89	-0.0
3,986,106	-		Rru_A3461	0.12	-0.0
3,986,238	+		Rru_A3461	0.21	-0.6
3,986,238	+		Rru_A3461	0.21	+0.9
3,986,238	+		Rru_A3461	0.21	-0.0
3,986,238	+		Rru_A3461	0.21	+0.4
3,986,239	-		Rru_A3461	0.21	+0.8
3,986,239	-		Rru_A3461	0.21	-1.5
3,986,239	-		Rru_A3461	0.21	-0.0
3,986,239	-		Rru_A3461	0.21	-0.0
3,986,240	+		Rru_A3461	0.21	+0.1
3,986,304	+		Rru_A3461	0.25	-0.0
3,986,532	-		Rru_A3461	0.40	+0.8
3,986,625	-		Rru_A3461	0.46	+1.2
3,986,841	+		Rru_A3461	0.60	+2.3
3,986,842	-		Rru_A3461	0.61	+0.3
3,986,842	-		Rru_A3461	0.61	+1.4
3,986,842	-		Rru_A3461	0.61	-0.3
3,986,970	+		Rru_A3461	0.69	+1.2
3,986,970	+		Rru_A3461	0.69	+0.6
3,986,970	+		Rru_A3461	0.69	-0.0
3,986,970	+		Rru_A3461	0.69	-1.0
3,986,971	-		Rru_A3461	0.69	-0.0
3,986,971	-		Rru_A3461	0.69	+0.8
3,986,971	-		Rru_A3461	0.69	-0.0
3,986,971	-		Rru_A3461	0.69	+0.8
3,986,971	-		Rru_A3461	0.69	+0.1
3,986,971	-		Rru_A3461	0.69	+0.9
3,986,971	-		Rru_A3461	0.69	-1.0
3,987,006	+		Rru_A3461	0.71	+0.3
3,987,006	+		Rru_A3461	0.71	-0.1
3,987,099	+		Rru_A3461	0.77	-0.0
3,987,108	+		Rru_A3461	0.78	-0.0
3,987,109	-		Rru_A3461	0.78	-0.0
3,987,109	-		Rru_A3461	0.78	-0.0
3,987,109	-		Rru_A3461	0.78	-0.0
3,987,109	-		Rru_A3461	0.78	-0.0
3,987,304	-				-0.0
3,987,304	-				-0.0
3,987,304	-				-0.0
3,987,466	+				+0.7
3,987,466	+				+0.9
3,987,542	+				-0.0
3,987,572	+				-0.0
3,987,649	-				+0.6
3,987,660	+				-0.0
3,987,660	+				+1.8
3,987,661	-				-0.0
3,987,661	-				-0.0
3,987,662	+				-1.6
3,987,662	+				-0.1
3,987,662	+				-0.3
3,987,662	+				-0.0
3,987,662	+				-0.0
3,987,662	+				-0.0
3,987,662	+				+1.2
3,987,663	-				-0.2
3,987,663	-				-0.0
3,987,663	-				-0.2
3,987,663	-				-0.0
3,987,663	-				-0.0
3,987,663	-				-0.7
3,987,663	-				-0.3
3,987,682	+				-0.0
3,987,682	+				+0.6
3,987,705	+				-0.4
3,987,706	-				-1.0
3,987,706	-				-0.0
3,987,706	-				+0.0
3,987,720	+				-1.0
3,987,721	-				-0.2
3,987,721	-				+0.4
3,987,876	+		Rru_A3462	0.29	-0.2
3,987,876	+		Rru_A3462	0.29	-0.3
3,987,877	-		Rru_A3462	0.29	-0.6
3,987,877	-		Rru_A3462	0.29	-1.4
3,987,896	-		Rru_A3462	0.32	-0.8
3,987,956	-		Rru_A3462	0.41	-1.1
3,987,957	+		Rru_A3462	0.42	-0.0
3,987,958	-		Rru_A3462	0.42	-0.0
3,987,958	-		Rru_A3462	0.42	-0.7
3,987,958	-		Rru_A3462	0.42	-1.0
3,987,982	+		Rru_A3462	0.45	+0.6
3,988,204	+		Rru_A3462	0.81	+1.0
3,988,204	+		Rru_A3462	0.81	-1.0
3,988,204	+		Rru_A3462	0.81	-1.0
3,988,204	+		Rru_A3462	0.81	+1.0
3,988,204	+		Rru_A3462	0.81	+0.5
3,988,204	+		Rru_A3462	0.81	+0.6
3,988,205	-		Rru_A3462	0.81	-0.0
3,988,205	-		Rru_A3462	0.81	-0.0
3,988,205	-		Rru_A3462	0.81	-0.0
3,988,205	-		Rru_A3462	0.81	-0.3
3,988,205	-		Rru_A3462	0.81	+0.3
3,988,379	-				-0.4