Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3460

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
3,983,072	-				+1.2
3,983,163	+		Rru_A3458	0.16	+0.2
3,983,163	+		Rru_A3458	0.16	+0.5
3,983,163	+		Rru_A3458	0.16	+0.5
3,983,175	+		Rru_A3458	0.18	-0.3
3,983,175	+		Rru_A3458	0.18	-0.0
3,983,176	-		Rru_A3458	0.18	-1.0
3,983,340	+		Rru_A3458	0.54	-0.1
3,983,340	+		Rru_A3458	0.54	+0.8
3,983,341	-		Rru_A3458	0.54	-0.0
3,983,341	-		Rru_A3458	0.54	+0.9
3,983,341	-		Rru_A3458	0.54	-1.0
3,983,341	-		Rru_A3458	0.54	+0.1
3,983,449	-		Rru_A3458	0.77	+1.0
3,983,490	+		Rru_A3458	0.86	+0.4
3,983,490	+		Rru_A3458	0.86	-0.0
3,983,490	+		Rru_A3458	0.86	+0.5
3,983,490	+		Rru_A3458	0.86	+0.8
3,983,491	-		Rru_A3458	0.87	+0.6
3,983,491	-		Rru_A3458	0.87	-0.0
3,983,527	-				-0.0
3,983,527	-				-0.0
3,983,631	+				-0.0
3,983,631	+				-0.0
3,983,632	-				-0.7
3,983,632	-				-0.0
3,983,943	-				-1.0
3,983,943	-				-0.0
3,983,956	+				-0.4
3,983,957	-				-2.0
3,984,013	+				-0.0
3,984,013	+				-0.0
3,984,013	+				-0.0
3,984,013	+				+0.3
3,984,013	+				+0.5
3,984,013	+				-0.0
3,984,013	+				-0.0
3,984,013	+				+0.9
3,984,013	+				+0.1
3,984,014	-				+2.0
3,984,014	-				-0.0
3,984,014	-				+1.2
3,984,014	-				+0.6
3,984,014	-				-0.4
3,984,014	-				+1.0
3,984,014	-				+1.4
3,984,014	-				+0.5
3,984,015	+				-0.0
3,984,015	+				+0.8
3,984,016	-				-0.0
3,984,016	-				+0.4
3,984,095	-				+2.0
3,984,095	-				-1.6
3,984,095	-				-0.0
3,985,066	+		Rru_A3460	0.56	+0.5
3,985,066	+		Rru_A3460	0.56	+0.3
3,985,066	+		Rru_A3460	0.56	+0.4
3,985,066	+		Rru_A3460	0.56	-0.0
3,985,067	-		Rru_A3460	0.56	+0.7
3,985,096	+		Rru_A3460	0.57	-0.5
3,985,096	+		Rru_A3460	0.57	-0.0
3,985,096	+		Rru_A3460	0.57	+0.1
3,985,096	+		Rru_A3460	0.57	-0.0
3,985,096	+		Rru_A3460	0.57	-0.0
3,985,097	-		Rru_A3460	0.57	+0.5
3,985,097	-		Rru_A3460	0.57	-0.4
3,985,097	-		Rru_A3460	0.57	-0.0
3,985,097	-		Rru_A3460	0.57	+1.0
3,985,097	-		Rru_A3460	0.57	-0.0
3,985,138	+		Rru_A3460	0.59	+0.7
3,985,139	-		Rru_A3460	0.59	-0.0
3,985,139	-		Rru_A3460	0.59	+0.3
3,985,360	+		Rru_A3460	0.71	-0.7
3,985,360	+		Rru_A3460	0.71	-0.0
3,985,361	-		Rru_A3460	0.71	+0.9
3,985,361	-		Rru_A3460	0.71	+0.1
3,985,361	-		Rru_A3460	0.71	+0.6
3,985,361	-		Rru_A3460	0.71	-0.0
3,985,361	-		Rru_A3460	0.71	-0.0
3,985,362	+		Rru_A3460	0.71	+0.1
3,985,362	+		Rru_A3460	0.71	+0.5
3,985,363	-		Rru_A3460	0.71	+1.4
3,985,363	-		Rru_A3460	0.71	-0.0
3,985,507	+		Rru_A3460	0.78	-0.0
3,985,507	+		Rru_A3460	0.78	-0.0
3,985,507	+		Rru_A3460	0.78	-0.8
3,985,507	+		Rru_A3460	0.78	+0.2
3,985,507	+		Rru_A3460	0.78	-0.1
3,985,508	-		Rru_A3460	0.78	-0.0
3,985,508	-		Rru_A3460	0.78	-0.4
3,985,508	-		Rru_A3460	0.78	+0.6
3,985,508	-		Rru_A3460	0.78	+0.4
3,985,534	-		Rru_A3460	0.80	+1.1
3,985,712	+		Rru_A3460	0.89	+1.1
3,985,713	-		Rru_A3460	0.89	-0.8
3,985,720	+		Rru_A3460	0.89	-0.0
3,985,720	+		Rru_A3460	0.89	-0.1
3,985,720	+		Rru_A3460	0.89	-0.0
3,985,721	-		Rru_A3460	0.89	-1.0
3,985,721	-		Rru_A3460	0.89	-0.0
3,985,721	-		Rru_A3460	0.89	-0.0
3,985,721	-		Rru_A3460	0.89	+0.5
3,985,721	-		Rru_A3460	0.89	-0.0
3,986,106	-		Rru_A3461	0.12	-0.0
3,986,238	+		Rru_A3461	0.21	-0.6
3,986,238	+		Rru_A3461	0.21	+0.9
3,986,238	+		Rru_A3461	0.21	-0.0
3,986,238	+		Rru_A3461	0.21	+0.4
3,986,239	-		Rru_A3461	0.21	+0.8
3,986,239	-		Rru_A3461	0.21	-1.5
3,986,239	-		Rru_A3461	0.21	-0.0
3,986,239	-		Rru_A3461	0.21	-0.0
3,986,240	+		Rru_A3461	0.21	+0.1
3,986,304	+		Rru_A3461	0.25	-0.0
3,986,532	-		Rru_A3461	0.40	+0.8
3,986,625	-		Rru_A3461	0.46	+1.2
3,986,841	+		Rru_A3461	0.60	+2.3
3,986,842	-		Rru_A3461	0.61	+0.3
3,986,842	-		Rru_A3461	0.61	+1.4
3,986,842	-		Rru_A3461	0.61	-0.3