Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3395 and Rru_A3396 are separated by 153 nucleotides Rru_A3396 and Rru_A3397 overlap by 1 nucleotides Rru_A3397 and Rru_A3398 are separated by 98 nucleotides Rru_A3398 and Rru_A3399 are separated by 244 nucleotides
Rru_A3395: Rru_A3395 - Transcriptional Regulator, LuxR family (NCBI), at 3,912,592 to 3,913,374
_A3395
Rru_A3396: Rru_A3396 - Autoinducer synthesis protein (NCBI), at 3,913,528 to 3,914,148
_A3396
Rru_A3397: Rru_A3397 - hypothetical protein (NCBI), at 3,914,148 to 3,914,399
_A3397
Rru_A3398: Rru_A3398 - Transcriptional Regulator, XRE family (NCBI), at 3,914,498 to 3,915,040
_A3398
Rru_A3399: Rru_A3399 - Transcriptional Regulator, BadM/Rrf2 family (NCBI), at 3,915,285 to 3,915,767
_A3399
Position (kb) 3914
3915 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3913.288 kb on + strand, within Rru_A3395 at 3913.289 kb on - strand, within Rru_A3395 at 3913.289 kb on - strand, within Rru_A3395 at 3913.289 kb on - strand, within Rru_A3395 at 3913.289 kb on - strand, within Rru_A3395 at 3913.372 kb on + strand at 3913.375 kb on + strand at 3913.375 kb on + strand at 3913.376 kb on - strand at 3913.376 kb on - strand at 3913.411 kb on + strand at 3913.412 kb on - strand at 3913.487 kb on + strand at 3913.500 kb on - strand at 3913.687 kb on + strand, within Rru_A3396 at 3913.687 kb on + strand, within Rru_A3396 at 3913.687 kb on + strand, within Rru_A3396 at 3913.687 kb on + strand, within Rru_A3396 at 3913.687 kb on + strand, within Rru_A3396 at 3913.688 kb on - strand, within Rru_A3396 at 3913.688 kb on - strand, within Rru_A3396 at 3913.689 kb on + strand, within Rru_A3396 at 3913.689 kb on + strand, within Rru_A3396 at 3913.690 kb on - strand, within Rru_A3396 at 3913.743 kb on + strand, within Rru_A3396 at 3913.743 kb on + strand, within Rru_A3396 at 3913.858 kb on + strand, within Rru_A3396 at 3913.858 kb on + strand, within Rru_A3396 at 3913.859 kb on - strand, within Rru_A3396 at 3913.859 kb on - strand, within Rru_A3396 at 3913.859 kb on - strand, within Rru_A3396 at 3913.912 kb on + strand, within Rru_A3396 at 3913.912 kb on + strand, within Rru_A3396 at 3913.913 kb on - strand, within Rru_A3396 at 3913.939 kb on + strand, within Rru_A3396 at 3913.940 kb on - strand, within Rru_A3396 at 3913.940 kb on - strand, within Rru_A3396 at 3914.157 kb on + strand at 3914.265 kb on + strand, within Rru_A3397 at 3914.265 kb on + strand, within Rru_A3397 at 3914.266 kb on - strand, within Rru_A3397 at 3914.580 kb on + strand, within Rru_A3398 at 3914.581 kb on - strand, within Rru_A3398 at 3914.945 kb on - strand, within Rru_A3398 at 3915.057 kb on - strand at 3915.121 kb on + strand at 3915.249 kb on - strand at 3915.258 kb on - strand at 3915.289 kb on + strand at 3915.290 kb on - strand at 3915.306 kb on + strand at 3915.386 kb on + strand, within Rru_A3399 at 3915.386 kb on + strand, within Rru_A3399 at 3915.387 kb on - strand, within Rru_A3399
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 3,913,288 + Rru_A3395 0.89 +0.7 3,913,289 - Rru_A3395 0.89 +0.9 3,913,289 - Rru_A3395 0.89 +0.3 3,913,289 - Rru_A3395 0.89 -2.0 3,913,289 - Rru_A3395 0.89 -1.0 3,913,372 + +1.0 3,913,375 + +0.9 3,913,375 + +1.1 3,913,376 - -1.6 3,913,376 - +0.5 3,913,411 + +0.2 3,913,412 - +1.0 3,913,487 + -0.0 3,913,500 - -0.6 3,913,687 + Rru_A3396 0.26 -0.0 3,913,687 + Rru_A3396 0.26 +1.0 3,913,687 + Rru_A3396 0.26 +0.4 3,913,687 + Rru_A3396 0.26 +0.4 3,913,687 + Rru_A3396 0.26 +0.6 3,913,688 - Rru_A3396 0.26 -2.3 3,913,688 - Rru_A3396 0.26 -0.0 3,913,689 + Rru_A3396 0.26 -0.0 3,913,689 + Rru_A3396 0.26 -0.0 3,913,690 - Rru_A3396 0.26 +1.4 3,913,743 + Rru_A3396 0.35 +0.4 3,913,743 + Rru_A3396 0.35 -1.6 3,913,858 + Rru_A3396 0.53 -0.0 3,913,858 + Rru_A3396 0.53 +2.3 3,913,859 - Rru_A3396 0.53 -0.0 3,913,859 - Rru_A3396 0.53 -1.0 3,913,859 - Rru_A3396 0.53 -0.0 3,913,912 + Rru_A3396 0.62 -1.0 3,913,912 + Rru_A3396 0.62 -1.6 3,913,913 - Rru_A3396 0.62 -0.0 3,913,939 + Rru_A3396 0.66 -0.0 3,913,940 - Rru_A3396 0.66 -0.0 3,913,940 - Rru_A3396 0.66 +1.3 3,914,157 + -1.0 3,914,265 + Rru_A3397 0.46 -0.6 3,914,265 + Rru_A3397 0.46 -0.0 3,914,266 - Rru_A3397 0.47 -1.0 3,914,580 + Rru_A3398 0.15 -0.0 3,914,581 - Rru_A3398 0.15 +0.2 3,914,945 - Rru_A3398 0.82 -0.0 3,915,057 - +0.5 3,915,121 + +1.4 3,915,249 - -0.0 3,915,258 - -0.9 3,915,289 + -0.0 3,915,290 - -1.0 3,915,306 + -1.6 3,915,386 + Rru_A3399 0.21 -0.0 3,915,386 + Rru_A3399 0.21 -0.0 3,915,387 - Rru_A3399 0.21 -1.3
Or see this region's nucleotide sequence