Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3317 and Rru_A3318 are separated by 93 nucleotides Rru_A3318 and Rru_A3319 are separated by 149 nucleotides Rru_A3319 and Rru_A3320 are separated by 115 nucleotides
Rru_A3317: Rru_A3317 - hypothetical protein (NCBI), at 3,826,395 to 3,827,531
_A3317
Rru_A3318: Rru_A3318 - Gamma-glutamyltransferase (NCBI), at 3,827,625 to 3,829,229
_A3318
Rru_A3319: Rru_A3319 - Xanthine-guanine phosphoribosyltransferase (NCBI), at 3,829,379 to 3,829,936
_A3319
Rru_A3320: Rru_A3320 - Cytidyltransferase-related (NCBI), at 3,830,052 to 3,830,924
_A3320
Position (kb)
3827
3828
3829
3830 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3827.857 kb on - strand, within Rru_A3318 at 3828.200 kb on + strand, within Rru_A3318 at 3828.289 kb on + strand, within Rru_A3318 at 3828.289 kb on + strand, within Rru_A3318 at 3828.289 kb on + strand, within Rru_A3318 at 3828.290 kb on - strand, within Rru_A3318 at 3828.290 kb on - strand, within Rru_A3318 at 3828.290 kb on - strand, within Rru_A3318 at 3828.290 kb on - strand, within Rru_A3318 at 3828.290 kb on - strand, within Rru_A3318 at 3828.477 kb on - strand, within Rru_A3318 at 3828.814 kb on + strand, within Rru_A3318 at 3828.815 kb on - strand, within Rru_A3318 at 3828.970 kb on + strand, within Rru_A3318 at 3828.970 kb on + strand, within Rru_A3318 at 3829.079 kb on + strand at 3829.079 kb on + strand at 3829.079 kb on + strand at 3829.080 kb on - strand at 3829.087 kb on + strand at 3829.087 kb on + strand at 3829.269 kb on + strand at 3829.269 kb on + strand at 3829.269 kb on + strand at 3829.270 kb on - strand at 3829.271 kb on + strand at 3829.272 kb on - strand at 3829.272 kb on - strand at 3829.329 kb on + strand at 3829.366 kb on + strand at 3829.366 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 3,827,857 - Rru_A3318 0.14 -0.0 3,828,200 + Rru_A3318 0.36 -0.0 3,828,289 + Rru_A3318 0.41 +2.5 3,828,289 + Rru_A3318 0.41 -1.0 3,828,289 + Rru_A3318 0.41 -0.0 3,828,290 - Rru_A3318 0.41 -0.0 3,828,290 - Rru_A3318 0.41 +3.8 3,828,290 - Rru_A3318 0.41 +2.8 3,828,290 - Rru_A3318 0.41 -1.0 3,828,290 - Rru_A3318 0.41 -0.0 3,828,477 - Rru_A3318 0.53 -1.6 3,828,814 + Rru_A3318 0.74 -0.0 3,828,815 - Rru_A3318 0.74 +3.0 3,828,970 + Rru_A3318 0.84 -0.0 3,828,970 + Rru_A3318 0.84 +3.2 3,829,079 + +3.2 3,829,079 + +3.3 3,829,079 + +2.7 3,829,080 - +3.9 3,829,087 + +2.7 3,829,087 + +3.9 3,829,269 + -0.0 3,829,269 + +3.5 3,829,269 + -0.0 3,829,270 - -1.7 3,829,271 + -0.0 3,829,272 - -2.1 3,829,272 - -0.0 3,829,329 + +2.8 3,829,366 + +1.3 3,829,366 + +1.9
Or see this region's nucleotide sequence