Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3275 and Rru_A3276 are separated by 66 nucleotides Rru_A3276 and Rru_A3277 are separated by 2 nucleotides Rru_A3277 and Rru_A3278 are separated by 229 nucleotides
Rru_A3275: Rru_A3275 - Hsp33 protein (NCBI), at 3,772,689 to 3,773,624
_A3275
Rru_A3276: Rru_A3276 - Ornithine carbamoyltransferase (NCBI), at 3,773,691 to 3,774,617
_A3276
Rru_A3277: Rru_A3277 - Acetylornithine and succinylornithine aminotransferase (NCBI), at 3,774,620 to 3,775,810
_A3277
Rru_A3278: Rru_A3278 - ADP-L-glycero-D-manno-heptose-6-epimerase (NCBI), at 3,776,040 to 3,777,023
_A3278
Position (kb)
3774
3775
3776 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3773.630 kb on + strand at 3773.693 kb on - strand at 3773.705 kb on + strand at 3773.705 kb on + strand at 3773.705 kb on + strand at 3773.705 kb on + strand at 3773.706 kb on - strand at 3773.991 kb on + strand, within Rru_A3276 at 3773.991 kb on + strand, within Rru_A3276 at 3773.992 kb on - strand, within Rru_A3276 at 3774.316 kb on + strand, within Rru_A3276 at 3774.316 kb on + strand, within Rru_A3276 at 3774.316 kb on + strand, within Rru_A3276 at 3774.316 kb on + strand, within Rru_A3276 at 3774.316 kb on + strand, within Rru_A3276 at 3774.668 kb on + strand at 3775.010 kb on + strand, within Rru_A3277 at 3775.023 kb on + strand, within Rru_A3277 at 3775.023 kb on + strand, within Rru_A3277 at 3775.024 kb on - strand, within Rru_A3277 at 3775.215 kb on + strand, within Rru_A3277 at 3775.215 kb on + strand, within Rru_A3277 at 3775.216 kb on - strand, within Rru_A3277 at 3775.216 kb on - strand, within Rru_A3277 at 3775.216 kb on - strand, within Rru_A3277 at 3775.780 kb on - strand at 3775.780 kb on - strand at 3775.780 kb on - strand at 3775.826 kb on + strand at 3775.826 kb on + strand at 3775.827 kb on - strand at 3775.827 kb on - strand at 3775.834 kb on + strand at 3775.834 kb on + strand at 3775.897 kb on + strand at 3775.898 kb on - strand at 3775.928 kb on + strand at 3775.928 kb on + strand at 3775.928 kb on + strand at 3775.928 kb on + strand at 3775.928 kb on + strand at 3775.928 kb on + strand at 3775.985 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 3,773,630 + -0.0 3,773,693 - -0.0 3,773,705 + -2.0 3,773,705 + -3.0 3,773,705 + -1.6 3,773,705 + -1.5 3,773,706 - -0.0 3,773,991 + Rru_A3276 0.32 -3.5 3,773,991 + Rru_A3276 0.32 -0.0 3,773,992 - Rru_A3276 0.32 -2.0 3,774,316 + Rru_A3276 0.67 -3.7 3,774,316 + Rru_A3276 0.67 -0.0 3,774,316 + Rru_A3276 0.67 -3.1 3,774,316 + Rru_A3276 0.67 +0.5 3,774,316 + Rru_A3276 0.67 -1.6 3,774,668 + -1.0 3,775,010 + Rru_A3277 0.33 -0.0 3,775,023 + Rru_A3277 0.34 -2.3 3,775,023 + Rru_A3277 0.34 -2.2 3,775,024 - Rru_A3277 0.34 -0.0 3,775,215 + Rru_A3277 0.50 -0.0 3,775,215 + Rru_A3277 0.50 -3.8 3,775,216 - Rru_A3277 0.50 -1.0 3,775,216 - Rru_A3277 0.50 -0.3 3,775,216 - Rru_A3277 0.50 -0.0 3,775,780 - -3.2 3,775,780 - -0.0 3,775,780 - -0.0 3,775,826 + -0.0 3,775,826 + -0.0 3,775,827 - -0.0 3,775,827 - -0.6 3,775,834 + -0.0 3,775,834 + -0.0 3,775,897 + -2.6 3,775,898 - -0.0 3,775,928 + -0.5 3,775,928 + -1.0 3,775,928 + +0.2 3,775,928 + -0.6 3,775,928 + -0.8 3,775,928 + -0.1 3,775,985 - -1.0
Or see this region's nucleotide sequence