Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3263 and Rru_A3264 overlap by 4 nucleotides Rru_A3264 and Rru_A3265 are separated by 167 nucleotides
Rru_A3263: Rru_A3263 - Prephenate dehydrogenase (NCBI), at 3,762,022 to 3,762,918
_A3263
Rru_A3264: Rru_A3264 - Histidinol-phosphate aminotransferase (NCBI), at 3,762,915 to 3,764,021
_A3264
Rru_A3265: Rru_A3265 - Chorismate mutase (NCBI), at 3,764,189 to 3,765,049
_A3265
Position (kb)
3762
3763
3764
3765 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 3761.967 kb on + strand at 3761.987 kb on + strand at 3762.312 kb on + strand, within Rru_A3263 at 3762.313 kb on - strand, within Rru_A3263 at 3762.313 kb on - strand, within Rru_A3263 at 3762.313 kb on - strand, within Rru_A3263 at 3762.313 kb on - strand, within Rru_A3263 at 3762.313 kb on - strand, within Rru_A3263 at 3762.313 kb on - strand, within Rru_A3263 at 3762.314 kb on + strand, within Rru_A3263 at 3762.314 kb on + strand, within Rru_A3263 at 3762.315 kb on - strand, within Rru_A3263 at 3762.315 kb on - strand, within Rru_A3263 at 3763.016 kb on - strand at 3763.190 kb on + strand, within Rru_A3264 at 3763.190 kb on + strand, within Rru_A3264 at 3763.191 kb on - strand, within Rru_A3264 at 3763.191 kb on - strand, within Rru_A3264 at 3763.191 kb on - strand, within Rru_A3264 at 3763.191 kb on - strand, within Rru_A3264 at 3763.265 kb on + strand, within Rru_A3264 at 3763.266 kb on - strand, within Rru_A3264 at 3763.266 kb on - strand, within Rru_A3264 at 3763.318 kb on + strand, within Rru_A3264 at 3763.318 kb on + strand, within Rru_A3264 at 3763.319 kb on - strand, within Rru_A3264 at 3763.435 kb on + strand, within Rru_A3264 at 3763.435 kb on + strand, within Rru_A3264 at 3763.435 kb on + strand, within Rru_A3264 at 3763.435 kb on + strand, within Rru_A3264 at 3763.436 kb on - strand, within Rru_A3264 at 3763.535 kb on + strand, within Rru_A3264 at 3763.535 kb on + strand, within Rru_A3264 at 3763.658 kb on - strand, within Rru_A3264 at 3763.658 kb on - strand, within Rru_A3264 at 3763.658 kb on - strand, within Rru_A3264 at 3763.666 kb on + strand, within Rru_A3264 at 3763.666 kb on + strand, within Rru_A3264 at 3763.666 kb on + strand, within Rru_A3264 at 3763.666 kb on + strand, within Rru_A3264 at 3763.667 kb on - strand, within Rru_A3264 at 3763.667 kb on - strand, within Rru_A3264 at 3763.667 kb on - strand, within Rru_A3264 at 3763.667 kb on - strand, within Rru_A3264 at 3763.681 kb on + strand, within Rru_A3264 at 3763.717 kb on + strand, within Rru_A3264 at 3763.717 kb on + strand, within Rru_A3264 at 3764.007 kb on - strand at 3764.087 kb on - strand at 3764.093 kb on + strand at 3764.129 kb on + strand at 3764.129 kb on + strand at 3764.129 kb on + strand at 3764.129 kb on + strand at 3764.130 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 3,761,967 + -0.0 3,761,987 + -0.0 3,762,312 + Rru_A3263 0.32 +1.5 3,762,313 - Rru_A3263 0.32 -0.0 3,762,313 - Rru_A3263 0.32 -0.0 3,762,313 - Rru_A3263 0.32 -0.0 3,762,313 - Rru_A3263 0.32 +0.6 3,762,313 - Rru_A3263 0.32 +1.9 3,762,313 - Rru_A3263 0.32 +0.6 3,762,314 + Rru_A3263 0.33 -0.0 3,762,314 + Rru_A3263 0.33 +0.1 3,762,315 - Rru_A3263 0.33 -0.0 3,762,315 - Rru_A3263 0.33 +0.4 3,763,016 - -0.0 3,763,190 + Rru_A3264 0.25 -0.0 3,763,190 + Rru_A3264 0.25 -3.2 3,763,191 - Rru_A3264 0.25 -2.1 3,763,191 - Rru_A3264 0.25 -0.0 3,763,191 - Rru_A3264 0.25 -0.0 3,763,191 - Rru_A3264 0.25 -1.0 3,763,265 + Rru_A3264 0.32 -0.0 3,763,266 - Rru_A3264 0.32 -3.0 3,763,266 - Rru_A3264 0.32 -1.2 3,763,318 + Rru_A3264 0.36 -0.0 3,763,318 + Rru_A3264 0.36 -3.4 3,763,319 - Rru_A3264 0.36 -2.0 3,763,435 + Rru_A3264 0.47 -0.0 3,763,435 + Rru_A3264 0.47 -0.0 3,763,435 + Rru_A3264 0.47 -2.9 3,763,435 + Rru_A3264 0.47 -0.0 3,763,436 - Rru_A3264 0.47 -0.0 3,763,535 + Rru_A3264 0.56 -2.0 3,763,535 + Rru_A3264 0.56 -3.3 3,763,658 - Rru_A3264 0.67 -0.0 3,763,658 - Rru_A3264 0.67 -0.0 3,763,658 - Rru_A3264 0.67 -0.0 3,763,666 + Rru_A3264 0.68 -4.7 3,763,666 + Rru_A3264 0.68 -2.6 3,763,666 + Rru_A3264 0.68 -2.1 3,763,666 + Rru_A3264 0.68 +0.7 3,763,667 - Rru_A3264 0.68 -0.0 3,763,667 - Rru_A3264 0.68 -0.0 3,763,667 - Rru_A3264 0.68 -3.8 3,763,667 - Rru_A3264 0.68 -1.6 3,763,681 + Rru_A3264 0.69 -0.0 3,763,717 + Rru_A3264 0.72 -5.7 3,763,717 + Rru_A3264 0.72 -2.0 3,764,007 - -0.0 3,764,087 - -0.4 3,764,093 + -0.0 3,764,129 + +0.6 3,764,129 + -1.6 3,764,129 + -0.0 3,764,129 + -0.0 3,764,130 - -0.0
Or see this region's nucleotide sequence